Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01672 ATGGAAAAATTGAAAGTTCCCGCTCAACGTTTTTCGCAACCTCTACCTTATAAATACACTCCATCTCCCACGGACAAGACACACAACACTTCCACACTCACCATTTCAGCATCTTTTAGCATTCTTCTTCAGAAACAAACTCTGTTTGAAATGGCTCGTACTAAGCAAACCGCAAGGAAGTCCACCGGAGGAAAGGCTCCGAGGAAGCAGCTGGCGACGAAGGCCGCGCGTAAGTCTGCTCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGTTTCAGGCCTGGCACGGTGGCGCTGAGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTTCTCATCAGGAAGCTTCCTTTCCAGAGGCTGGTCAGGGAAATAGCTCAGGATTTCAAGACCGATCTCCGCTTCCAGAGCAGTGCCGTCTCTGCTCTGCAGGAAGCCGCAGAGGCATACCTCGTTGGTCTTTTCGAAGATACCAACCTCTGTGCCATTCACGCCAAGAGAGTTACCATTATGCCCAAGGACATTCAGCTTGCACGTAGGATTAGGGGCGAGAGAGCTTAG 561 0.5276 MEKLKVPAQRFSQPLPYKYTPSPTDKTHNTSTLTISASFSILLQKQTLFEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01672 186 PRINTS Histone H3 signature 164 185 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 108 125 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 53 67 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 148 164 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 67 81 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 84 105 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 PRINTS Histone H3 signature 130 148 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 SUPERFAMILY Histone-fold 52 183 IPR009072 GO:0046982
Pumo11g01672 186 PANTHER HISTONE H3 51 184 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 FunFam Histone H3 52 100 - -
Pumo11g01672 186 FunFam Histone H3.3 103 186 - -
Pumo11g01672 186 Gene3D Histone, subunit A 52 186 IPR009072 GO:0046982
Pumo11g01672 186 SMART h35 84 186 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 MobiDBLite consensus disorder prediction 15 31 - -
Pumo11g01672 186 MobiDBLite consensus disorder prediction 55 91 - -
Pumo11g01672 186 ProSitePatterns Histone H3 signature 2. 117 125 IPR000164 GO:0000786|GO:0003677|GO:0030527
Pumo11g01672 186 MobiDBLite consensus disorder prediction 12 31 - -
Pumo11g01672 186 Pfam Core histone H2A/H2B/H3/H4 51 182 IPR007125 GO:0003677
Pumo11g01672 186 ProSitePatterns Histone H3 signature 1. 65 71 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01672 Pumo-Chr11 48109792 48110539 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01672 K11253 - lbb:132644222 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04052 4 81228941 81240655 Pumo11g01672 11 48109792 48110539 ECH
Pumo11g01672 11 48109792 48110539 Pumo11g01672 11 48109792 48110539 ECH
Pumo4g04052 4 81228941 81240655 Pumo11g01672 11 48109792 48110539 PCT