Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01631 ATGGCGTGTCGTTCCTTGGCAAATAAATGTAAAATCCGTGATTTGGCTTCGGTATTAGTGGGAGAGTTTACGAGAAGTAGCAAACCCATAAAAGTCGCTTCAACTTCATTGCCCTTTGTTGAATGCAAAACGGCGTCGTGTTTCCGGCAATACCACGACGGAAGGCCCAGAGGACCCCTTTGGAGGGGGAAAAAGCTCATTGGCAAAGAGGCGCTTTTTGTGATATCGGGGTTGAAGAGGCTCAAGGATGACGAAGATAAGCTTCACAAGTTCGTCAAAACTCACGTTCTCAGACTCTTGAAGATGGACATGGTCGCTGTTCTCACTGAACTCGAGCGCCAAGAACAAGTTTCTCTCGCTCTCATGACGTTTAAGGTGATGCAAAAGCAAGATTGGTACAAGCCTGATGCGTACCTTTATAAGGACTTGATCATTGCATTGGCAAGGGCTAAGAAAATGGATCAAGTGTTGCAATTGTGGGAAAGCATGAGAAAGGAAAATCTGTTCCCTGATTCTCAGACTTACACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCTGATGCGATGAATGTATACGAGGACATGAAGAATTCTCCGGATCCACCAGAGGAATTGCCATTCAGAATTTTGTTGAAAGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTCGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCTCCACAAGAGATATTTGGCGCACGCTGA 756 0.4458 MACRSLANKCKIRDLASVLVGEFTRSSKPIKVASTSLPFVECKTASCFRQYHDGRPRGPLWRGKKLIGKEALFVISGLKRLKDDEDKLHKFVKTHVLRLLKMDMVAVLTELERQEQVSLALMTFKVMQKQDWYKPDAYLYKDLIIALARAKKMDQVLQLWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNVYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01631 251 NCBIfam pentatricopeptide repeat 174 200 IPR002885 -
Pumo11g01631 251 NCBIfam pentatricopeptide repeat 140 171 IPR002885 -
Pumo11g01631 251 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 43 250 IPR044795 -
Pumo11g01631 251 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Pumo11g01631 251 Pfam PPR repeat family 135 182 IPR002885 -
Pumo11g01631 251 Gene3D Tetratricopeptide repeat domain 65 251 IPR011990 GO:0005515
Pumo11g01631 251 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01631 Pumo-Chr11 47626290 47627224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01631 113 216 Miscellaneous Gene Families AT4G11690 29.808 2.08e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01631 - - gmx:100306428 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01631 11 47626290 47627224 Pumo11g01631 11 47626290 47627224 ECH