Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01629 ATGCGGCATTGGAAACAATTGGGAGAGGTGTTGGTGACGGCATCTATCACCAACACGCTATCCCACTCTCACTCTGCAACTATCAACCTCCCTCGCTCCCTCGCCCTTGGACTCACCCAACCCCTCATTCTCAAAATTCTTTCAAACCCAACTCTTCACGTTTCTCACAAGCTTCGATTCTTCGAATGGTCTCGCTCTCACCACAACCCTTCTCCCGCTGTATACTCCCTTATCCTGCGCACCCTCTCCCGCGAGGGTTTCTTCTCCGACATCCCCTCCCTCCTCCATTCCATGACGCAAGACGGCGTCGTTCTCGATCCCCACTCCCTCAACCTCCTCCTCCACTCCTTCATCATCTCCTCTAACTTCAATTTAGCTCTCCAATTACTCGATTACGTTCAACACCTTCACCTCGACCCTACTCCAATTTACAACTCTCTCCTCGTTGCTCTGCTTGCAAAAAACCAACTCTCTCTCGCCTTATCCATATTCTTCAAGCTCCTCGATGCAGTTGATTCGAAATCCATCGCCTGCAACCAGTTGTTGGTTGCTCTTAGGAAAGCAGACATGAGGGTGGAGTTTAAGCAAGTGTTCCAGAGGTTGAGGGAGAAGAGAGGGTTCTCATTTGACACATGGGGGTACAATGTGTGTATCCACGCGTTTGGTTGTTGGGGTGATTTGGCTACTTGCTTTGCGCTTTTCAAGGACATGAAGGATGATGATAAGGGGTTGGTTGCTCCTGATTTGTGCACCTACAACAGTCTCATCACCGCGCTTTGCAGGGTTGGCAAGGTGGATGATGCGCTCGTTGTGTACGACGAGCTCAATGGCTCGGCTCATCAACCCAATCGCTACACTTACACAAACCTTATTCAAGCCTGTTCCAAGACTTTCAGAATGGATGATGCCATCAGGGTTTTTAATCAGATGCAGAGCAATGGATTCCGCTCGGATACACTTGTTTATAACTCTCTGCTGGATGGACATTTTAAGGCGACAAAGGTTACGGAAGCCTGTCAGCTGTTTGAGAAAATGGTTCAAGAAGGGGTGAGACCTTCGTGCTGGACTTATAATATTCTCATTCATGGATTGTTTAGGAATGGCAGGGCGGAGGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTTCTTACAGCATTGTTGTGTTGCAACTTTGTAAGGAGGGTCAACTGGAGGAAGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTCTTGTTGACCTTGTCACCATAACATCCCTCTTGATTAGCATTCATAGACACGGTCGCTGGGATTGGACAGATCGGCTTATGAAGCATATCAGGGAAGGTGATCTGGTACTTTCCGTTCTTAAGTGGAAAGCAGGAATGGAAGCTTCTATGAAGAACCCACCTAGCAAGAAAAAGGATTACTCGCCCATCTTCCCTTCCAAAGGAGATTTTAGTGACATCATCAGCTTCATGACCTGTGCCCAGGATACCACCAGCATTAATGATGGGGAGGAACCTTCCTGCAATGAAATTGACGAGTGGTCATCATCACCGCACATGGATAAATTGGCCAATCAAGTGAGCTCCACTGGCTATTCTTCCCAGCTGTTTACTCCTTCCTGCGGACAAAGAGTTCAAGAAAAAGGGCCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGGATCCTGTGAGTTATACTTATAATTCTATCATGAGCTCTTTTGTTAAAAAGGGCTATTTTGCTGAAGCTTGGGCTATTCTAACTGAAATGGGAGAAAAATTTTGCCCTGCTGATATAGCTACATACAATATGATAATTCAAGGTTTAGGAAAGATGGGAAGAGCTGATCTAGCCAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGTGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTTTGGGGAAGGCAGGCCGAATCGACGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTCACTTATAATACATTGATTGAAGTTCACAGTAAGGCAGGGCAATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGATGCTGGATGCACCCCTAACCATGTTACAGACACTACTTTAGATTATCTAGGGAGGGAAATTGATAAATTGAGATACCAAAAGGCATCGATTTTGAGTGAAAAAGATGATCCTTCTTGA 2304 0.4531 MRHWKQLGEVLVTASITNTLSHSHSATINLPRSLALGLTQPLILKILSNPTLHVSHKLRFFEWSRSHHNPSPAVYSLILRTLSREGFFSDIPSLLHSMTQDGVVLDPHSLNLLLHSFIISSNFNLALQLLDYVQHLHLDPTPIYNSLLVALLAKNQLSLALSIFFKLLDAVDSKSIACNQLLVALRKADMRVEFKQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKDMKDDDKGLVAPDLCTYNSLITALCRVGKVDDALVVYDELNGSAHQPNRYTYTNLIQACSKTFRMDDAIRVFNQMQSNGFRSDTLVYNSLLDGHFKATKVTEACQLFEKMVQEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGISYSIVVLQLCKEGQLEEALQLVEEMESRGFLVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLVLSVLKWKAGMEASMKNPPSKKKDYSPIFPSKGDFSDIISFMTCAQDTTSINDGEEPSCNEIDEWSSSPHMDKLANQVSSTGYSSQLFTPSCGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPADIATYNMIIQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGQLKDAYKFLKMMLDAGCTPNHVTDTTLDYLGREIDKLRYQKASILSEKDDPS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 43 161 IPR011990 GO:0005515
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 162 295 IPR011990 GO:0005515
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Pumo11g01629 767 Pfam Pentatricopeptide repeat domain 93 148 IPR002885 -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Pumo11g01629 767 SUPERFAMILY TPR-like 251 733 IPR011990 GO:0005515
Pumo11g01629 767 Pfam PPR repeat family 247 295 IPR002885 -
Pumo11g01629 767 Pfam PPR repeat family 665 704 IPR002885 -
Pumo11g01629 767 Pfam PPR repeat family 318 365 IPR002885 -
Pumo11g01629 767 Pfam PPR repeat family 596 642 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 356 384 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 250 275 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 667 701 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 702 735 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 597 630 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Pumo11g01629 767 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 296 480 IPR011990 GO:0005515
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pumo11g01629 767 Pfam PPR repeat 384 416 IPR002885 -
Pumo11g01629 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 32 274 - -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pumo11g01629 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Pumo11g01629 767 Pfam PPR repeat 214 240 IPR002885 -
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 625 693 IPR011990 GO:0005515
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 694 747 IPR011990 GO:0005515
Pumo11g01629 767 Gene3D Tetratricopeptide repeat domain 521 624 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01629 Pumo-Chr11 47620413 47622716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01629 560 750 Glycosyltransferase AT1G05670 33.854 1.55e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01629 - - gmx:100788992 1445.25