Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01616 ATGTATGGTCTCCTCAGAAACACAACATTGCTCAGGATTCCCGCGACAGATGGCATCTTCAGCCGTCGGTTTTTCCGATCAGAACCCGAAAGCTATGCTGAACTCATTGATATATACGCTCGCGATCGAGCGTTGCACGCTGGCAAGAAGCTTCACGCGCACCTAATCACCAACGGTTTCGCTCGTTTCAACGTGCTTGCTTCCAACCTCGTATCCTTGTACGCGTTCTGTGGCCAACTCTCCCACGCGCGGAAACTGTTCGACCAAATTCCCACAACAAATGTTCGCCGCTGGATCGCTCTCATTGGCACGTGCGCTCGCTGCGGCTTCTACGATCACGCTCTTGCCGTGTTTTCTGAGATGCAAGCTATTCAAGGGCTTACTCCCAACTACGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGCCACGTCGGGGATCGAATCACCGGAGAGAAAATACATGGCTTCATTTTGAAGTGTTCGTTCGAACTTGATTCTTTTGTGTCCAGTTCTTTGATTGTTATGTACTCCAAGTGTGCGAAAGTTGAGGATGCGCGCAAGGTGTTTGATGGGATGGCTGTGAAGGACACGGTGGCTCTAAATGCTGTTGTTGCTGGGTATGTTCAACAGGGTGCTGCAAATGAGGCACTGGGTTTGGTGGAAAGTATGAAGTTGATGGATTTGAAGCCAAATGTGGTAACTTGGAACTCTCTGATATTTGGGTTTTCGCTGAAAGGTGACCAAGGAATGGTGTCTGAGATTTTTAGGTTGCTGGTTGCAGACGGGGTGGAGCCTGATGTGATATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGTAATAAGGAGGCATTTGATGCGTTTAAGCAAATGTTGAGTCTTGGGTTCTGCCCAACTTCGGCTACTATAAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAATTAGGATTGGGAGAGAGATTCATGGCTACGCTTTGGTGACTGGGGTGGAGGGAGATATATATGTAAGGAGTGCTCTGGTTGACATGTATGCAAAATGTGGGTTTATTTCAGAAGCGAGGAGTTTGTTTAGTAGGATGCCGGAGAAGAACACAGTCACGTGGAACTCTATCATTTTTGGTTTTGCAAATCATGGGTATTGCGAGGAAGCTATTGAGCTCTTCAATCAAATGGAGAAGGAAGGGACAACCAATTTGGATCATTTAACTTTCACGGCAGCTCTCACTGCATGCAGTCATGTTGGAGATATTGAGCTTGGGCAGAGGCTGTTCAAGATTATGCAAGAAAAATACAGTATTGAACCACGGCTAGAGCATTATGCATGCATGGTGGATCTTCTTGGTCGAGCGGGGAAACTCAATGAAGCTTATTGCATGATCAAGACAATGCCTATTGAACCTGATTTATTTGTGTGGGGTGCATTATTGGCTGCTTGTAGAAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTATGCATCTAATGCAATTAGAGCCCCAGAATGCTGCAAACTGTCTTCTGCTGTCCAGCCTATATGCCGATGTTGGCAAATGGGGAAAGGTTGAGAGGATCAAGAAAAGGATAAAGAAGGGAAAACTCAGAAAACTTCAAGGTTTAAGTTGGATAGATAATTTATAA 1653 0.4616 MYGLLRNTTLLRIPATDGIFSRRFFRSEPESYAELIDIYARDRALHAGKKLHAHLITNGFARFNVLASNLVSLYAFCGQLSHARKLFDQIPTTNVRRWIALIGTCARCGFYDHALAVFSEMQAIQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMAVKDTVALNAVVAGYVQQGAANEALGLVESMKLMDLKPNVVTWNSLIFGFSLKGDQGMVSEIFRLLVADGVEPDVISWTSVISGFVQNFRNKEAFDAFKQMLSLGFCPTSATISTLLPACATAARIRIGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARSLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGTTNLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLNEAYCMIKTMPIEPDLFVWGALLAACRNHGHVELAEVAAMHLMQLEPQNAANCLLLSSLYADVGKWGKVERIKKRIKKGKLRKLQGLSWIDNL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01616 550 Pfam PPR repeat family 266 314 IPR002885 -
Pumo11g01616 550 Pfam PPR repeat family 196 243 IPR002885 -
Pumo11g01616 550 Pfam PPR repeat family 367 416 IPR002885 -
Pumo11g01616 550 Gene3D Tetratricopeptide repeat domain 401 549 IPR011990 GO:0005515
Pumo11g01616 550 Gene3D Tetratricopeptide repeat domain 285 400 IPR011990 GO:0005515
Pumo11g01616 550 Gene3D Tetratricopeptide repeat domain 20 155 IPR011990 GO:0005515
Pumo11g01616 550 Pfam E motif 486 548 IPR046848 -
Pumo11g01616 550 Gene3D Tetratricopeptide repeat domain 192 261 IPR011990 GO:0005515
Pumo11g01616 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Pumo11g01616 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 548 IPR046960 GO:0003723|GO:0009451
Pumo11g01616 550 NCBIfam pentatricopeptide repeat 370 399 IPR002885 -
Pumo11g01616 550 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Pumo11g01616 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Pumo11g01616 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 367 IPR002885 -
Pumo11g01616 550 FunFam Pentatricopeptide repeat-containing protein 100 240 - -
Pumo11g01616 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Pumo11g01616 550 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 339 549 - -
Pumo11g01616 550 Pfam PPR repeat 444 467 IPR002885 -
Pumo11g01616 550 Pfam PPR repeat 171 194 IPR002885 -
Pumo11g01616 550 Pfam PPR repeat 98 122 IPR002885 -
Pumo11g01616 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01616 Pumo-Chr11 47497576 47499780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01616 78 548 Glycoside Hydrolase AT3G49170 31.755 7.10e-83 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01616 - - gmx:100790576 984.171