Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01614 ATGTTGTCTGAATTGGGAAGAAGGCCTATGCTTGGGAGTAACGAGGGTTCATTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGCGAGAGCTTAATATTTTTAGGAGTGGATCGGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGGTGTTGGTGGTGGTGGTGCTGCTACTGGTGCAACTGCTGCCTTTTCGGAGTTTCAAGGGACTAAGGATGTGAATGGGATTGCTTCTGAAGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAAGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCAGGTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGAACTGAAGATAATGGTGGTAGATCGCTGTTTTCTACCCCGCCGGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAGACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGGGGCTGAGCAAACAAAAGAGCTTTGCGGAAATTTTTCAGGATGATTTGGGGCATAATACCTCTATCACACGCCTTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGAAAATGATATCATTAGTTCTGCTGAAGCAGAGTTGGCTCATGTACGCCGTGAGTCCATGCCCACTGATGCGCTAAGGTCAGGATCAAATGTTCAAGGATCATCTGCAGCCCAAAATGTTGGACCACCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCTATTGGTGGCGGTAGAGCCATTGCTTCTGACAAGAGAGCTATTGCTAGTCCAGATGCATTTAACGGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAACCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTGGTCAAGATCATGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGCAGGAGTGGGTCAGATCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACCTCAGTACCAGCCTTTAGATGGTACAAATTCATTTACTAACTATGGTCTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATTTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTGGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGTTCCATCTGATGTGCATAACCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTCGATCCCATGTATCTTCAGTACCTGAGGACATCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTAGGCAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCACAGTACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTCGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTATATCCACTTCTCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTCTCCGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAAAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTCGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGTGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCGCGCGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCCTCAACCTGCTTAG 3165 0.4436 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGVGGGGAATGATAAFSEFQGTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASGLGGIGDRRKVNRTEDNGGRSLFSTPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGGLSKQKSFAEIFQDDLGHNTSITRLPSRPASRNAFDENDIISSAEAELAHVRRESMPTDALRSGSNVQGSSAAQNVGPPASYSYAAAVGSSLSRSTTPDPQLVARAPSPCITPIGGGRAIASDKRAIASPDAFNGVSSGINESADLVAALSVMNLSADDVLDGENHLPSQVESDVDNHQRYLFGRQGGQDHGKQHAYLKKSESAHLQNSSKSSRSGSDLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPPQYQPLDGTNSFTNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPGMDSRILGGGLASGAAVPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVISTSPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPPQPA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01614 1054 FunFam Pumilio homolog 1 isoform 2 697 1044 - -
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 790 825 IPR001313 GO:0003723
Pumo11g01614 1054 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 1037 - -
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 754 789 IPR001313 GO:0003723
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 388 469 - -
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 899 934 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 899 934 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 718 753 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 935 970 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 790 825 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 977 1012 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 826 861 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 754 789 IPR001313 GO:0003723
Pumo11g01614 1054 SMART pum_5 862 898 IPR001313 GO:0003723
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 971 1012 IPR001313 GO:0003723
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 161 175 - -
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 144 194 - -
Pumo11g01614 1054 CDD Pumilio 714 1034 IPR033712 GO:0003723
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 1 24 - -
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 260 281 - -
Pumo11g01614 1054 SUPERFAMILY ARM repeat 701 1035 IPR016024 -
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 935 970 IPR001313 GO:0003723
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 826 861 IPR001313 GO:0003723
Pumo11g01614 1054 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 698 1038 IPR033133 GO:0003723
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 718 753 IPR001313 GO:0003723
Pumo11g01614 1054 ProSiteProfiles Pumilio RNA-binding repeat profile. 862 898 IPR001313 GO:0003723
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 406 469 - -
Pumo11g01614 1054 Pfam Nucleic acid binding protein NABP 310 717 IPR012940 -
Pumo11g01614 1054 MobiDBLite consensus disorder prediction 264 281 - -
Pumo11g01614 1054 Gene3D - 698 1044 IPR011989 -
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 722 756 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 758 791 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 866 901 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 905 936 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 940 973 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 794 827 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 837 860 IPR001313 GO:0003723
Pumo11g01614 1054 Pfam Pumilio-family RNA binding repeat 985 1014 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01614 Pumo-Chr11 47480606 47487653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01614 K17943 - gmx:100787039 1910.58