Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01580 ATGGCTCGCTCATTGTTCCTATGCTCATTCCTCATCCTCGCTGTCACCACCCTCTCCTCACCAGCGGGTGCTCTCATCCTTACCCTCGTTAACAACTGCAACTACACCGTGTGGCCCGCCATCCAGCCCAACGCCGGCCACCCCGTCCTCGCCGGCGGCGGCCTCACCCTCCGCACCCTCACCCACCAGTCCATCCCCGTCCCGGACGCCCACTGGTCCGGCCGCGTCTGGGCCCGCACCGGCTGCGCCTACTCCGGCGCCGCCTTCTCCTGCGCCAGCGGCGACTGCGGCGGCCGCCTCCAGTGCAACGGCGCCGGCGGCGCCGCCCCCGCCACCCTCGCTCAGATCGAGGTCCACCACGGCAACAACGACTACGCCTCCTACGGCGTCAGCCTCGTCGACGGCTTCAACGTCCCCATGACCGTCACCCCGCACGAGGGCAAAGGCGTGTGCCCCGTCGTGGGTTGCCGCATCGATTTGCTCGCCACGTGTCCGCACGTGCTGCAGCACCGTGTTCCCGCGGGTCACGGACCCGTGGTGGCTTGCAAAAGCGGGTGCGAGGCTTTTCACACGGACGAGCTCTGCTGCAGGAACCATTTCAACAACCCCAACACGTGCAAGGGCTCTATCTACTCCTCCTTCTTCAAGCACGCGTGCCCTGCCACGTTTACTTTTGCTCATGACACCCCCTCGCTCTTGCACCAGTGCTCCTCCCCGCGTGAGCTTAAGGTTATCTTTTGCCATTAA 747 0.6533 MARSLFLCSFLILAVTTLSSPAGALILTLVNNCNYTVWPAIQPNAGHPVLAGGGLTLRTLTHQSIPVPDAHWSGRVWARTGCAYSGAAFSCASGDCGGRLQCNGAGGAAPATLAQIEVHHGNNDYASYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRIDLLATCPHVLQHRVPAGHGPVVACKSGCEAFHTDELCCRNHFNNPNTCKGSIYSSFFKHACPATFTFAHDTPSLLHQCSSPRELKVIFCH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01580 248 CDD TLP-PA 26 247 - -
Pumo11g01580 248 SMART tha2 27 248 IPR001938 -
Pumo11g01580 248 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Pumo11g01580 248 PIRSF PR5 1 248 IPR001938 -
Pumo11g01580 248 FunFam Osmotin-like protein 26 247 - -
Pumo11g01580 248 PANTHER OS03G0233200 PROTEIN 11 247 IPR001938 -
Pumo11g01580 248 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Pumo11g01580 248 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Pumo11g01580 248 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Pumo11g01580 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Pumo11g01580 248 Pfam Thaumatin family 31 247 IPR001938 -
Pumo11g01580 248 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Pumo11g01580 248 Gene3D Thaumatin 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01580 Pumo-Chr11 47063718 47064605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01580 27 247 Receptor kinase-like Gene Family AT5G38280 34.956 2.18e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01580 - - gmx:100818233 504.212