Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01550 ATGATCTATCGCAGAGCCAAAACGATTAATCCAAATCCATTGCTCCATTATGCTAATAATCGATCCCTATCCCACACGCATAAACCTCGACCCCGTGAAAGACCAACTCCAAAGTTTCGCAAGCGCATTCCTTTCGTCACCGAAGTCAAAACAGTGGAAGACCCAGAAGAAGCCTTGTGTCTCTTTCACTGTTACAAAGAACAGGGTTTCCGGCACTATTACCCTTCCTATGCCGCATTGCTCTACAAACTAGCTCGTTCTAGAAAGTTCGATGCCGTTGAAACGGTTCTCGCTCACATGAAAGACACCGAAATGCAATGCAGAGAGAGTGTCTTCATTGCTCTCTTTCAACATTACGGTCCCCAAAAAGCCGTTGAACTCTTCAACAGAATGCCTCAGTTCAATTGCACCCGCACGATACAGTCCTTCAATGCGCTTCTCAATGTTCTAGTCGACAACAACCGGTTTGACGAGGCCAATGATGTTTTCGGACGATCCTATGAAATGGGTTTTCGTCCAAACACTGTCACATTCAATATAATGGTGAAGGGGTGGTTGGCGAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTTGTCACTTATAATAGTCTCATTGGGTTTTTGTGTAGGAAGGGTGATTTGGATAAAGCAATGGCCTTGCTCGAGGACATGGGCCAGAAAGGAAAGCGTGCAAATGAAGTAACTTATGCGCTGTTGATGGAGGGTTTGTGCTCTGTGGAGAAGCATGAGGAAGCTAAGAAACTAATGTTTGATATGGCGTATCGAGGGTGTAAAGCTCAGCCGGTGAATTTTGGTGTTTTGATGAATGATCTTGGAAAGAGAGGAAAGGTTGAAGAGGCCAAGTATTTGTTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACATACAACATATTGATAAATTATCTTTGCAAGGAAGGCAAGGCAGTAGAAGCTTACAAAATCTTACTTGAAATGCAGATTGGGGGATGTGAGCCCAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCAGATTGGGGATTTTGAGGTTGGTTTGAGTGTTTTGAATGCAATGTTTACCAGTAGACATTGTCCACGTTCGGAAACATTTAATTGTCTGGTTGTTGGCTTGTTAAAATCTGGAAATATTGATGGTGCTTGCTTTGTTTTGGAAGAGATGGAGAAGAGAAATGTAGAATTTGATTCTGGGAGCTGGGAAACTATAATAAAGTCTGCCTGCAGTGAGGATAATGGTGTAAGTGAGCTTATGACTATACTTACATCTCCGTGTATCTAA 1350 0.4341 MIYRRAKTINPNPLLHYANNRSLSHTHKPRPRERPTPKFRKRIPFVTEVKTVEDPEEALCLFHCYKEQGFRHYYPSYAALLYKLARSRKFDAVETVLAHMKDTEMQCRESVFIALFQHYGPQKAVELFNRMPQFNCTRTIQSFNALLNVLVDNNRFDEANDVFGRSYEMGFRPNTVTFNIMVKGWLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKRANEVTYALLMEGLCSVEKHEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKYLFHEMKKRRLKPDVVTYNILINYLCKEGKAVEAYKILLEMQIGGCEPNAATYRMVVDGLCQIGDFEVGLSVLNAMFTSRHCPRSETFNCLVVGLLKSGNIDGACFVLEEMEKRNVEFDSGSWETIIKSACSEDNGVSELMTILTSPCI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01550 449 Gene3D Tetratricopeptide repeat domain 273 343 IPR011990 GO:0005515
Pumo11g01550 449 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Pumo11g01550 449 Gene3D Tetratricopeptide repeat domain 204 272 IPR011990 GO:0005515
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Pumo11g01550 449 MobiDBLite consensus disorder prediction 17 38 - -
Pumo11g01550 449 Pfam PPR repeat 283 310 IPR002885 -
Pumo11g01550 449 Pfam PPR repeat 387 416 IPR002885 -
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Pumo11g01550 449 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 54 341 - -
Pumo11g01550 449 Gene3D Tetratricopeptide repeat domain 345 443 IPR011990 GO:0005515
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Pumo11g01550 449 MobiDBLite consensus disorder prediction 23 37 - -
Pumo11g01550 449 Pfam PPR repeat family 140 184 IPR002885 -
Pumo11g01550 449 Pfam PPR repeat family 313 362 IPR002885 -
Pumo11g01550 449 Pfam PPR repeat family 208 257 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 211 240 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 316 350 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 352 383 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 176 209 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 387 419 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 142 175 IPR002885 -
Pumo11g01550 449 NCBIfam pentatricopeptide repeat 284 315 IPR002885 -
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Pumo11g01550 449 SUPERFAMILY TPR-like 86 334 IPR011990 GO:0005515
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Pumo11g01550 449 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01550 111 435 Glycosyltransferase AT1G05670 29.358 1.04e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01550 - - gmx:100776556 854.358