Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01513 ATGGCGGCGTCGCGAATCGTGGCCCACCCTCCGCCCTATCTCCACCGTCAATCTCCGCCGTCAGACGCCGCGCCGTCCCTCAACCTCACACTCCACCCAAAACGGTACCGTAACCTCGGCATTCGCGCTTCCCTTCGTGGCCACGAAGAGAAGAAGCAAAACGATCTCGCCGATAAACCTCACTCCGTCGAATTGCGAACATCCACCACCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTTTCCGATGGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCATGGTGCTTACAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAACAATTCGACACTGCTTTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTTCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTGAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGCGAGAACACACTGACAAAATTCGGATTGGTGCGAGAAGCAGTTGACGATACGGCTGGTGCTGCTAAGCATGTCGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCCGCAAAGATCTATGGCTTGAATATACTTGCTCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTGGCCCGAGAACCTATAATTCCAGGCACTGATAGGCCATTTAAGACTAGCATAGTGTTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCGTTGCGTCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGTAACCAACCTCTACGAGCATCAGATGATAGCAACAATTCAAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCAGATCAGAGTGCACAAAATGCCCTAAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCACGACGTAA 1158 0.4767 MAASRIVAHPPPYLHRQSPPSDAAPSLNLTLHPKRYRNLGIRASLRGHEEKKQNDLADKPHSVELRTSTTDDVVSRDLLSLPRPLSSTQLSASVSDGSRLRVAYQGVHGAYSESAAQKAYPNCEAVPCEQFDTAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVRHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAYHKLQDAGAVASSAAAKIYGLNILAQDIQDDSDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASDDSNNSKYFDYLFYVDFEASMADQSAQNALRHLKEFATFLRVLGSYPVDTSTT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01513 385 CDD ACT_CM-PDT 288 379 - -
Pumo11g01513 385 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 55 383 - -
Pumo11g01513 385 SUPERFAMILY Periplasmic binding protein-like II 101 282 - -
Pumo11g01513 385 FunFam Arogenate dehydratase 184 264 - -
Pumo11g01513 385 Gene3D - 185 264 - -
Pumo11g01513 385 Gene3D - 96 184 - -
Pumo11g01513 385 ProSiteProfiles ACT domain profile. 290 379 IPR002912 -
Pumo11g01513 385 SUPERFAMILY ACT-like 271 380 IPR045865 -
Pumo11g01513 385 FunFam Arogenate dehydratase 283 382 - -
Pumo11g01513 385 ProSiteProfiles Prephenate dehydratase domain profile. 101 276 IPR001086 GO:0004664|GO:0009094
Pumo11g01513 385 ProSitePatterns Prephenate dehydratase signature 1. 252 274 IPR018528 GO:0004664|GO:0009094
Pumo11g01513 385 FunFam Arogenate dehydratase 96 183 - -
Pumo11g01513 385 Pfam Prephenate dehydratase 102 278 IPR001086 GO:0004664|GO:0009094
Pumo11g01513 385 Gene3D - 283 382 - -
Pumo11g01513 385 MobiDBLite consensus disorder prediction 1 28 - -
Pumo11g01513 385 CDD PBP2_Ct-PDT_like 101 278 - -
Pumo11g01513 385 ProSitePatterns Prephenate dehydratase signature 2. 316 323 IPR018528 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01513 Pumo-Chr11 46053251 46057785 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01513 K05359 - gmx:100787387 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01513 11 46053251 46057785 Pumo11g01513 11 46053251 46057785 ECH