Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01496 ATGCATAGGATCAGCACCGCAAGGTCCATTTTTTCTGCGGTTTTCAGAAGCAAATCTCAGCCTCACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAGGAAAGTGTTGCTCAATTTGCAACGGAAAATATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGATCTGTTGGTCTTTCTTATGGTGCTCATTCAAACTTGTGTATCAATCAGCTGGTGAGGAATGGAAGTCCTGCTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATCACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGACAAACTTGGGATGCGAGGAAGTGATACGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGGTGGTCCTCTGGGTATTATGCAGGCATGTCTTGATGTTGCCCTTCCTTATGTTCGACAAAGAGAACAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGGGATTGTGACAATGGAAAAATTGACCCAAAGGATTGTGCTGGAGCTATACTATGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGTTATGTGAATGAGTATCCAACTGGTCGTCTCCTGAGAGATGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGCAATAA 1233 0.438 MHRISTARSIFSAVFRSKSQPHSAAFSTSLLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAGGPLGIMQACLDVALPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01496 410 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 150 263 - -
Pumo11g01496 410 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Pumo11g01496 410 PANTHER ACYL-COA DEHYDROGENASE 31 409 - -
Pumo11g01496 410 Gene3D - 263 406 - -
Pumo11g01496 410 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 25 148 - -
Pumo11g01496 410 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Pumo11g01496 410 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Pumo11g01496 410 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 147 IPR013786 GO:0016627|GO:0050660
Pumo11g01496 410 PIRSF PIGM 160 410 - -
Pumo11g01496 410 PIRSF PIGM 27 123 - -
Pumo11g01496 410 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 408 IPR036250 GO:0016627
Pumo11g01496 410 Gene3D - 150 262 IPR046373 GO:0016627
Pumo11g01496 410 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Pumo11g01496 410 CDD IVD 32 408 IPR034183 GO:0003995
Pumo11g01496 410 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 365 384 IPR006089 GO:0003995
Pumo11g01496 410 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 264 408 - -
Pumo11g01496 410 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 406 IPR009075 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01496 Pumo-Chr11 45812988 45819298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01496 1 410 Acyl Lipid Metabolism Gene Families AT3G45300 83.659 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01496 K00253 - gmx:100794259 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01496 11 45812988 45819298 Pumo11g01496 11 45812988 45819298 ECH