Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01478 ATGAGAGCGACACAGATTCTGTTCGTTTTGCTTTGGTTCTTCTGTGTTTATGCCCCTCATTCGTTTTGCGCAAATGTCACGTATGACCACAGAGCATTGGTCATTGATGGCAAGCGCCGTGTCTTTGTCTCTGGTTCTATTCATTACCCTCGTAGCACTCCGGAGATGTGGCCAGACCTCATTCAGAAATCCAAAGATGGAGGACTTGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCAAGGCCAGTATAATTTTGAAGGTAGGGCAGATTTGGTTAAATTTATCAAGGCAGTTGCAGCAGCAGGTCTATATGTGCATCTCCGGATTGGTCCATATGCATGTGCTGAATGGAACTATGGTGGTTTCCCTCTTTGGCTACATTTTATTCCGGGAATTCAGTTCCGAACTGATAACAAACCATTCGAGGCAGAAATGAAGAAGTTCACTGCTAAGATTGTGGATATGATGAAGCAAGAGAACCTCTATGCGTCACAGGGAGGACCTATTATTTTGTCTCAGATTGAAAATGAGTATGGGAACATTGATGCGGCCTATGGTCCTGCTGCTAAATCCTACATAAATTGGGCAGCATCCATGGCAACATCTCTTGATACAGGGGTTCCTTGGGTAATGTGCCAACAGGCAGATGCTCCTGATCCAATTATTAACACGTGCAATGGATTTTACTGCGACCAATTCACACCAAATTCTAATTCAAAACCAAAAATGTGGACTGAGAATTGGAGTGGATGGTTAGTGTTTCTTTCATTTGGTGGTGCTGTGCCTTACAGACCAGTGGAAGATCTTGCTTTTGCAGTGGCACGCTTTTACCAGCGAGGTGGAACTTTTCAAAATTATTATATGTACCATGGAGGGACTAATTTTGGCCGAACTACTGGTGGACCTTTCATTTCTACTAGTTATGATTATGATGCACCAATTGATGAGTATGGAATTATTAGACAGCCTAAGTGGGGTCACCTTAAAGATGTGCATAAGGCCATAAAGCTTTGTGAAGAAGCACTGATAGCAACTGATCCAACAATTACAACTCCTGCACCAAATATAGAGGCTGCAGTTTACAAGACAGGATCCGTATGTGCTGCCTTCCTTGCCAACATTGCCACATCTGATGCAACAGTAACCTTTAATGGAAATTCATATCACTTGCCGGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTACGATTTCAAGCTTCACAACCGAATCTTTAAAAGAAGAGGTTGGTTCTTTGGAAGGTTCTGACTCAGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGATTACTGGAGCAAATAAATACAACTGCTGATAAAAGTGATTACTTGTGGTACTCGTTAAGCATTGATCTTGAAGATGATACTGGCTCTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCCCTTCATGCTTTCATAAATGGGAAGCTTGCAGGGAGTGGAACTGGCAACAGTGGCAACGCTAAGGTCAAAGTAGACATTCCCGTCACACTAGTGGCTGGGAAGAACACAATTGATCTCCTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCGGGGATCACTGGTCCAGTGATATTGAAAGGTTTGAACAATGGCAGCACTCTTGACCTCTCCTCCCAGCAATGGACATATCAGGTTGGCCTTAAAAATGAAGATTTAGGTCCATCTAGTGGCAGTTCTGGACAGTGGAATTCACAATCTACCTTACCTACAAATCAACCCTTGACTTGGTACAAGACAAACTTCGCTGCTCCCTCTGGCAGTAATCCAGTTGCTATTGACTTCACGGGGATGGGAAAAGGCGAGGCTTGGGTGAATGGACAGAGCATTGGGCGATATTGGCCTACAGATGTCTCTCCAAATGGTGGTTGTACTGACTCATGCAATTATAGAGGGGCCTATAGTTCATCCAAATGTCTCAAGAACTGTGGAAAACCATCACAGACATTAAACCACGTACCACGATCATGGTTACAACCAGATAGCAACACACTTGTATTGTTTGAGGAAAGTGGAGGCGACCCTACACAAATCTCTTTCGCTACAAAACAGATAGGAAGCGTATGTTCACATGTATCCGAATCTCACCCTCCACCTGTAGACTTGTGGAATTCAGATAAAGGAAGAAAAGTAGGGCCTGTCTTGTCACTGGAGTGCCCTTATCCTAATCAGGTTATCTCTTCCATTAAATTTGCAAGTTTTGGAACGCCTTATGGAACTTGTGGAAACTTCAAACATGGACGGTGCAGAAGTAATAAGTCTCTATCCATTGTGCAGAAGGCCTGCATTGGATCAAGCAGTTGTAGAATTGGACTATCAATTAATACATTTGGAGATCCATGTAAAGGAGTAACAAAAAGTTTAGCTGTTGAAGCTTCTTGTGCATAG 2520 0.4286 MRATQILFVLLWFFCVYAPHSFCANVTYDHRALVIDGKRRVFVSGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVQGQYNFEGRADLVKFIKAVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEAEMKKFTAKIVDMMKQENLYASQGGPIILSQIENEYGNIDAAYGPAAKSYINWAASMATSLDTGVPWVMCQQADAPDPIINTCNGFYCDQFTPNSNSKPKMWTENWSGWLVFLSFGGAVPYRPVEDLAFAVARFYQRGGTFQNYYMYHGGTNFGRTTGGPFISTSYDYDAPIDEYGIIRQPKWGHLKDVHKAIKLCEEALIATDPTITTPAPNIEAAVYKTGSVCAAFLANIATSDATVTFNGNSYHLPAWSVSILPDCKNVVLNTAKINSASTISSFTTESLKEEVGSLEGSDSGWSWISEPIGISKADSFSKFGLLEQINTTADKSDYLWYSLSIDLEDDTGSQTVLHIESLGHALHAFINGKLAGSGTGNSGNAKVKVDIPVTLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLNNGSTLDLSSQQWTYQVGLKNEDLGPSSGSSGQWNSQSTLPTNQPLTWYKTNFAAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTDVSPNGGCTDSCNYRGAYSSSKCLKNCGKPSQTLNHVPRSWLQPDSNTLVLFEESGGDPTQISFATKQIGSVCSHVSESHPPPVDLWNSDKGRKVGPVLSLECPYPNQVISSIKFASFGTPYGTCGNFKHGRCRSNKSLSIVQKACIGSSSCRIGLSINTFGDPCKGVTKSLAVEASCA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01478 839 FunFam Beta-galactosidase 292 417 - -
Pumo11g01478 839 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Pumo11g01478 839 PANTHER BETA-GALACTOSIDASE RELATED 17 762 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 FunFam Beta-galactosidase 593 733 - -
Pumo11g01478 839 Gene3D - 424 569 - -
Pumo11g01478 839 Gene3D - 754 839 IPR043159 -
Pumo11g01478 839 Pfam Glycosyl hydrolases family 35 33 339 IPR031330 -
Pumo11g01478 839 Gene3D - 570 733 - -
Pumo11g01478 839 FunFam Beta-galactosidase 750 839 - -
Pumo11g01478 839 SUPERFAMILY Galactose-binding domain-like 585 752 IPR008979 -
Pumo11g01478 839 Gene3D Glycosidases 21 343 - -
Pumo11g01478 839 CDD Gal_Rha_Lectin_BGal 756 838 - -
Pumo11g01478 839 FunFam Beta-galactosidase 418 572 - -
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 617 631 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 PRINTS Glycosyl hydrolase family 35 signature 644 660 IPR001944 GO:0004553|GO:0005975
Pumo11g01478 839 FunFam Beta-galactosidase 22 343 - -
Pumo11g01478 839 SUPERFAMILY Galactose-binding domain-like 400 574 IPR008979 -
Pumo11g01478 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Pumo11g01478 839 Pfam Beta-sandwich domain in beta galactosidase 347 416 IPR041392 -
Pumo11g01478 839 Pfam Galactose binding lectin domain 761 838 IPR000922 GO:0030246
Pumo11g01478 839 ProSiteProfiles SUEL-type lectin domain profile. 753 839 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01478 Pumo-Chr11 45259122 45266196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01478 23 694 Glycoside Hydrolase AT2G28470 76.583 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01478 - - gmx:100793198 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01478 11 45259122 45266196 Pumo11g01478 11 45259122 45266196 ECH