Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01471 ATGGCGGAACCTCTCTCAAACACCGAACTCTCTCCTTCTAAAACCCTAGGCCCAACCAACGGCCACGATTCCACTTCGGAGCCGCATCAAACGGCTCCGCAAGACACTCAACTCAATAGAGAAGACGACGTCGTTCCGACCGCGAAACGGAAGAGGGACGACGGCGAAGAGCGTTCGCTCCATCCACTGTGGAAGACCAGCCTCTGCTCCTACTTCCGGAGCCACAACGGATCATGCAGCCACGGCAGCGCGTGCCGCTACGCGCACGGCGAGGAGGAGCTCCGCCCCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCGTTGAAGGCCGAGACGGAAGAAAAGCGCGCCGTCTCGGAGGAAGTGATGATGACGGAGGCCGTCGTCGACGACGGCGATGCCGACGGCGACGACGGTTGTGGCTCCAATCACGCGCTTAGTAAATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGAATTTGAGGAATTTTCTCAGCGAACAGGGTATACCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCAGTGAAGGAATTAGAAGGAAAATCAATTGGCAACAAAACGATAAAGGTTGCTGATGTTCTTCCTCGGTCATTTGAAAAGAAAAGTAATGCCAGTGTTGCATCCCGTCAAGAAGTAGATGAGGAGAGTACAGGGGTTGATGTAGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCGCTCTCATGCAGATTCTAAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTCCTCTTCCTGAGTGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTGTTATTGCATCTCCAATTGTAAATGGATACCGTAACAAGTGTGAATTTTCTGTTGGATATTCTCTGGAAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAATGGGAATGTTGCTGATGCTGAAACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCCGCTGAATTCAAGAGGCTTGCTCAGGCATTTGTTGCTGGAGCTACTTCACATTGTCCAACATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCGCCAGCTGATGCACCACTGCATTCGCTTCCCATTCCTAAAGCAGTTGGTGATCCTGAGGTGGATGAAAATAATAATGCCACGGATGTAAGAATCCATGATTATATCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACACTGCTATTTGATGTATGCTGTGGGACTGGAACAATTGGCCTCACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCCGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAGATTTATATGTTCGAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTGAATGTGACTAAGGAACAAGTTGATGATCCTAACATCTCTGGAAGTGGCAATGACATTCCCGAGGATAGTGCCTGCCCAGAACCTGAAAATGCTGAAATAGCATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAGCACTTGTGAACAAGCTGATGGGATCTCTGAACAGGCAGAGGACATGACAGGATCTCTGTTAAGGGATGATGCAAATGTGTCCAAGGAACAAAGTGATGATCCAAATATCTCTGGAAGTGGCAATGACATTCCTAAGGATAGTACCTGCCCAGAGCCTGAAAACGGTGAAATGACATCTCATTCAAAAAATAACAATGCAGGAGTTGGAGGTGAAGTTCAGAAGGGTAGCACTTCTGAAAACGAGAATACTTCCATGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACCGTAAGAACCATATACTCTATGTGCAAGCGATTGCAACTGTGA 2427 0.4615 MAEPLSNTELSPSKTLGPTNGHDSTSEPHQTAPQDTQLNREDDVVPTAKRKRDDGEERSLHPLWKTSLCSYFRSHNGSCSHGSACRYAHGEEELRPRPDNTWDPTSERAKKALKAETEEKRAVSEEVMMTEAVVDDGDADGDDGCGSNHALSKCLVHLPRKWSSENLRNFLSEQGIPFKHAKKKKGMMIGFVTFEDEEQLKSSVKELEGKSIGNKTIKVADVLPRSFEKKSNASVASRQEVDEESTGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKKSALMQILKKLTRNARKACPNGVPLPEWILKSREIGGLPCKLEGVIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNVADAETFGGIAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVAGATSHCPTLPLTALVVQDHQGISNVAPADAPLHSLPIPKAVGDPEVDENNNATDVRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVRFICSKAEDVMGSLLREYLNVTKEQVDDPNISGSGNDIPEDSACPEPENAEIASHCPENNNAEVGSEVQKGSTCEQADGISEQAEDMTGSLLRDDANVSKEQSDDPNISGSGNDIPKDSTCPEPENGEMTSHSKNNNAGVGGEVQKGSTSENENTSMQQFKNVVAIVDPPRAGLHPTVRTIYSMCKRLQL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01471 808 SMART c3hfinal6 63 91 IPR000571 GO:0046872
Pumo11g01471 808 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 807 IPR045850 -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 42 59 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 1 59 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 742 773 - -
Pumo11g01471 808 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 276 799 IPR029063 -
Pumo11g01471 808 SUPERFAMILY CCCH zinc finger 61 96 IPR036855 GO:0046872
Pumo11g01471 808 Pfam Methyltransferase domain 572 630 IPR025714 -
Pumo11g01471 808 SMART rrm1_1 153 220 IPR000504 GO:0003723
Pumo11g01471 808 Coils Coil 106 126 - -
Pumo11g01471 808 SUPERFAMILY RNA-binding domain, RBD 157 228 IPR035979 GO:0003676
Pumo11g01471 808 CDD AdoMet_MTases 574 628 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 644 692 - -
Pumo11g01471 808 Gene3D Vaccinia Virus protein VP39 515 807 IPR029063 -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 672 692 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 1 41 - -
Pumo11g01471 808 ProSiteProfiles Zinc finger C3H1-type profile. 63 92 IPR000571 GO:0046872
Pumo11g01471 808 Coils Coil 284 304 - -
Pumo11g01471 808 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 64 91 IPR000571 GO:0046872
Pumo11g01471 808 Gene3D - 55 97 - -
Pumo11g01471 808 Gene3D - 154 243 IPR012677 -
Pumo11g01471 808 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 274 808 IPR010280 GO:0006396|GO:0008173
Pumo11g01471 808 MobiDBLite consensus disorder prediction 715 773 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 231 264 - -
Pumo11g01471 808 MobiDBLite consensus disorder prediction 720 734 - -
Pumo11g01471 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 218 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01471 K15332 - gmx:100777601 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01471 11 45183309 45187831 Pumo11g01471 11 45183309 45187831 ECH