Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01459 ATGTATAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGGTTTAAGGCTACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCAGTACTGCTCCACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCGCTCAATTCCCTCTCCAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTATACAAGAACCTCTTGCAGGAAATTGCACAGAGGGTAGGGGCGCCATTGCCACAGTACTTTACATTCAGGTCAGGCTTAGGACATCTTCCTGTTTTTACTGGGACAGTAGAGTTAGCTGGAATCATGTTTACTGGCGAACCTGCCAAGAATAAGAAACAAGCGGAGAAAAATGCAGCTATGGCGGCATGGTCATCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCGGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACCGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCGGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCTCTACCTGCTGCTACATCAAAGATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGGCATCTAGTAGCAGCATCTCCAGTTCCAGCTTCCAGAGACAATTCTGCGATGCCACAACTTTCTGCTACACCAGAAAGTCGAGGAATCCGTCGCCCTAAGTTCCCTGCAGCCGGAGCAGCACCCTATGTTCCCATTAGACAAATGAGACCATCTTGCCAGGGGATGGCACCTCCGGTGACGATAAGGACTGCAATACCTGTATTCTCCCCACCACCACTACCAGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCCTGTACGAGTTGCTCCTCCGGTCACCTATTCGGCAAGCTGTTCCGGTATTTGCTGCTCCACCTCCACCAGTTCGAAAAGATGA 1059 0.5146 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPLPAATSKILPLICQKAAPRSRHLVAASPVPASRDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMRPSCQGMAPPVTIRTAIPVFSPPPLPAAAVSHQVLRAPPVRVAPPVTYSASCSGICCSTSTSSKR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01459 352 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Pumo11g01459 352 Gene3D - 84 155 - -
Pumo11g01459 352 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Pumo11g01459 352 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Pumo11g01459 352 Gene3D - 2 83 - -
Pumo11g01459 352 SMART DRBM_3 88 154 IPR014720 -
Pumo11g01459 352 SMART DRBM_3 2 69 IPR014720 -
Pumo11g01459 352 SUPERFAMILY dsRNA-binding domain-like 88 160 - -
Pumo11g01459 352 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Pumo11g01459 352 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Pumo11g01459 352 MobiDBLite consensus disorder prediction 245 272 - -
Pumo11g01459 352 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Pumo11g01459 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Pumo11g01459 352 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Pumo11g01459 352 PANTHER - 1 326 - -
Pumo11g01459 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01459 Pumo-Chr11 45058502 45062109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01459 - - gmx:100812728 614.764