Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01426 ATGGCCTCAACCAACGCTCTCTCTTCAGCCTCCATTCTCCGCTCTTCCAACCGCCAGTCTCTGACCCGAAGAGTGAACCACAACGGAAGAGTAAATTACCGGCAACCGAATAACCGTTTCGCGGTGAAAGCCTCCGCCAAAGAGATTGCGTTCGACCAGAATTCCCGGTCTGCCATGCAGGCCGGCATTGACAAGCTCGCCGATGCAGTTGGGCTCACTCTTGGGCCCAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCTAAAGTGGTTAACGATGGTGTCACCATTGCTCGCGCTATTGAGCTTCCCGATCCTATGGAGAATGCCGGTGCAGCTCTTATTAGAGAGGTTGCTAGTAAGACTAATGACTCTGCGGGTGATGGAACTACCACGGCTTCGGTACTTGCTCGCGAGATAATTAAGCTGGGGCTTCTCAGTGTGACTTCTGGGGCTAATCCTGTGTCTCTTAAAAGAGGGATTGATAAGACTGTGCTGGGTTTGGTGGAGGAGTTGGAGAAGAAGGCCAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTGGCTACTATTTCTGCTGGTAATGATGAGTTGATTGGGCAAATGATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATCGAGTCTTCATCGTCATTTGAGACGACAGTTGAAGTGGAGGAAGGAATGGAGATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTTCAGCAATAAAAGATATTATTCCACTTTTGGAGAAAACCACTCAGTTGAGAGCTCCTTTGCTTATCATCGCTGAGGATGTCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCTGGCTTTGGTGAGCGGCAAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCACTGGAGCAGCTTGGTTTGGCTCGGAAAGTTACCATCTCCAAGGATTCTACCACTATCATTGCTGATGCCGCGACAAAGGATGAGTTGCAAGCTAGGGTTGCTCAGTTAAAGAAGGAGCTGTCACAGACAGACTCGGTATATGATACTGAGAAACTGGCTGAGAGGATAGCTAAGTTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACCGAGCTTGAGGATCGTAAGCTCCGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGTGGCGGTACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCCGACATTGTGCAAAAGGCACTGATAGCACCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAGTGGTGAATGGGAGGTGGGTTACAATGCTATGACAGACAGGTATGAGAATTTAGTGGAGGCTGGAGTTATCGACCCTGCCAAGGTAACAAGGTGTGCGTTGCAGAATGCTGCTTCAGTCGCTGGAATGGTGTTGACCACGCAGGCCATTGTGGTGGAAAAACCTAGGCCCAAGGCACCTGTAGCTGGTGCCCCACAAGGCCTTACCGTTTGA 1755 0.4866 MASTNALSSASILRSSNRQSLTRRVNHNGRVNYRQPNNRFAVKASAKEIAFDQNSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVLGLVEELEKKARPVKGGDDIKAVATISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERQKALLQDIAILTGAEFQASDLGLLVENTSLEQLGLARKVTISKDSTTIIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALIAPAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMTDRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPRPKAPVAGAPQGLTV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01426 584 Coils Coil 374 401 - -
Pumo11g01426 584 SUPERFAMILY GroEL-intermediate domain like 404 450 IPR027410 -
Pumo11g01426 584 SUPERFAMILY GroEL apical domain-like 226 418 IPR027409 -
Pumo11g01426 584 Hamap Chaperonin GroEL [groEL]. 45 582 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 MobiDBLite consensus disorder prediction 1 32 - -
Pumo11g01426 584 Pfam TCP-1/cpn60 chaperonin family 66 569 IPR002423 GO:0005524
Pumo11g01426 584 NCBIfam chaperonin GroEL 46 570 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 Gene3D - 49 566 IPR027413 -
Pumo11g01426 584 SUPERFAMILY GroEL-intermediate domain like 179 244 IPR027410 -
Pumo11g01426 584 ProSitePatterns Chaperonins cpn60 signature. 447 458 IPR018370 GO:0005524|GO:0006457
Pumo11g01426 584 Gene3D GroEL 234 415 IPR027409 -
Pumo11g01426 584 Gene3D - 179 452 IPR027410 -
Pumo11g01426 584 CDD GroEL 47 567 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 SUPERFAMILY GroEL equatorial domain-like 54 565 IPR027413 -
Pumo11g01426 584 FunFam 60 kDa chaperonin 234 415 - -
Pumo11g01426 584 PRINTS 60kDa chaperonin signature 310 333 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 PRINTS 60kDa chaperonin signature 125 152 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 PRINTS 60kDa chaperonin signature 70 96 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 PRINTS 60kDa chaperonin signature 440 461 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 PRINTS 60kDa chaperonin signature 392 417 IPR001844 GO:0042026|GO:0140662
Pumo11g01426 584 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 38 574 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01426 Pumo-Chr11 44609558 44613144 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01426 - - gmx:100775463 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01426 11 44609558 44613144 Pumo11g01426 11 44609558 44613144 ECH