Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01381 ATGGCTCCAAAACGTGCTGAGAAGTTGGTGGTCAGATCCACCAAGAAAGTTGTGGAATCAAGTGTGCAAGTTTCTGTTGTAGGCAAAAGACTAACCCGGGGAAACAAAGATACTCAAACAACTGAGGAAGAAGAAGAAGTAGGTAACCAAGAGCATGTGATCATCATTCCCATTCAAGAAGTGACTCCTCAAGCCCAAAAGGATTCACCTAACTCTGCCATGACCACTGAAAACAAAGCTGAGCAAGAGAATATTCAAGATGGTGGAGTCCAAAATCAAGAGGAAGAGCAAAAGAGAGACAATGAGGAAGTCAAGGAGAAGAATAATAAGGCCAAGGCCCCAAAAGGGCAAAATGGTAAAGTGAAAAAAAGAGGGAGAAAAAGGGGGAGGAGAAGTGTTGAAGGGTACCAGAGGTATGTGTATAGGGTGTTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCTAAATGCATGACTATTCTGAACAACTTGATGAATGACATGTTTGAGAGGCTGGCTTTTGAGGCTGCTAAGTTGAAGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCAGGAGAGCTTGGGAAGCATGCAATTGCTGAAGGGGTCAAAGCTGTGAACAACTACACTTCCTATGAATATGAAGCCTGA 684 0.4371 MAPKRAEKLVVRSTKKVVESSVQVSVVGKRLTRGNKDTQTTEEEEEVGNQEHVIIIPIQEVTPQAQKDSPNSAMTTENKAEQENIQDGGVQNQEEEQKRDNEEVKEKNNKAKAPKGQNGKVKKRGRKRGRRSVEGYQRYVYRVLKQVHPEMGISSKCMTILNNLMNDMFERLAFEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNNYTSYEYEA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01381 227 MobiDBLite consensus disorder prediction 35 50 - -
Pumo11g01381 227 Pfam Core histone H2A/H2B/H3/H4 86 199 IPR007125 GO:0003677
Pumo11g01381 227 MobiDBLite consensus disorder prediction 62 91 - -
Pumo11g01381 227 MobiDBLite consensus disorder prediction 116 131 - -
Pumo11g01381 227 PRINTS Histone H2B signature 194 207 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 PRINTS Histone H2B signature 207 220 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 PRINTS Histone H2B signature 155 175 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 PRINTS Histone H2B signature 136 154 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 PRINTS Histone H2B signature 177 194 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 MobiDBLite consensus disorder prediction 29 131 - -
Pumo11g01381 227 FunFam Histone H2B 74 223 - -
Pumo11g01381 227 SMART h2b3 126 222 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 PANTHER HISTONE H2B 108 222 IPR000558 GO:0000786|GO:0003677|GO:0030527
Pumo11g01381 227 SUPERFAMILY Histone-fold 107 222 IPR009072 GO:0046982
Pumo11g01381 227 Coils Coil 90 110 - -
Pumo11g01381 227 MobiDBLite consensus disorder prediction 92 113 - -
Pumo11g01381 227 Gene3D Histone, subunit A 93 223 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01381 Pumo-Chr11 43944741 43945425 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01381 K11252 - gmx:100786873 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01381 11 43944741 43945425 Pumo11g01381 11 43944741 43945425 ECH