Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01376 ATGGCTCCGTTTCCGTCCGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGAAGACGAAGAAGAAGTGGAAGCTGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATCCCTTCGCTGCTTGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATTCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACACTGAAGGTGAATATATTGGAAGCTGTTCCGATGACGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTCGTTGCTTGGGCTAATGACGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAGGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGTCTGGTATGATCCAGGTGGATATTGTGGCATCCTTCCAAACCAGCTATTTCATCTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGGAGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTACCAGTACATGGGTTCGAGCATTACAGGGCAAAGGACTATTCTCTTGCTCATGCCCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCGAAACCAAGGGATACTGAAGATCATATTGCGTGGCTTCTCCAGCATGGGTGGCATGAAAAGGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGCGAACTACTTGACGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACGGTGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTATATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCGTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCATCACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGAGGGGCAATATGAGAAAGCCTTTTTGTTGTATGCGGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAGGTTGTCCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCGTTGTTAATCCAGAACAGGGACTTAATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCTGATGATAAGAGTGATCGTAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTAAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACGCGAAACAGGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAGTCAAGTATTACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAATGAAGAAGATGAGCCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTATTTGACAAATCTCCAAGTCTGAGAACTGTGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCGTTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTAGTAGTAACAAGAAAGAGACCGAAGCTACGTCCTTAGAGGCAGATACATATGATGATTACAATGGTTATGAGGACGATGCTAGTGATGGCGATGAAGAAACCAAGTCGGGTGGACCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2874 0.4412 MAPFPSENGVEGDDEREEEDEEEEEEDEEEVEAEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHQKAANGSFRQVPLSGMIQVDIVASFQTSYFISGLAPFGDALVVLAYIPGGEDGDKDFSSTAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSASPVISAIEPQLNTSSMTDSLKEALAELYVIEGQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPPEVVKQLLNADDKSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNAKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHGISLGNEEDEPRVKMSDTRASQVFDKSPSLRTVEVKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSNKKETEATSLEADTYDDYNGYEDDASDGDEETKSGGPRMRCILCTTAAS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01376 957 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 934 IPR045111 GO:0006623
Pumo11g01376 957 MobiDBLite consensus disorder prediction 1 42 - -
Pumo11g01376 957 SUPERFAMILY WD40 repeat-like 57 250 IPR036322 GO:0005515
Pumo11g01376 957 SMART ring_2 872 952 IPR001841 -
Pumo11g01376 957 PIRSF Vps41 1 913 IPR016902 GO:0034058|GO:0046907
Pumo11g01376 957 MobiDBLite consensus disorder prediction 912 945 - -
Pumo11g01376 957 FunFam Vacuolar protein sorting-associated protein 41 homolog 552 817 - -
Pumo11g01376 957 CDD RING-H2_Vps8 870 904 - -
Pumo11g01376 957 Gene3D - 8 276 IPR015943 GO:0005515
Pumo11g01376 957 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 611 758 IPR000547 GO:0006886|GO:0016192
Pumo11g01376 957 SMART CLH_2 611 758 IPR000547 GO:0006886|GO:0016192
Pumo11g01376 957 MobiDBLite consensus disorder prediction 11 37 - -
Pumo11g01376 957 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 283 - -
Pumo11g01376 957 Coils Coil 14 39 - -
Pumo11g01376 957 Pfam Region in Clathrin and VPS 611 754 IPR000547 GO:0006886|GO:0016192
Pumo11g01376 957 Gene3D Tetratricopeptide repeat domain 544 817 IPR011990 GO:0005515
Pumo11g01376 957 SMART WD40_4 173 209 IPR001680 GO:0005515
Pumo11g01376 957 SMART WD40_4 85 124 IPR001680 GO:0005515
Pumo11g01376 957 SUPERFAMILY RING/U-box 865 909 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01376 K20184 - gmx:100804340 1828.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01376 11 43878138 43887990 Pumo11g01376 11 43878138 43887990 ECH