LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01333	ATGGCGATTGATAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCTAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGTGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTCGACATATCAAAAGTACAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTTTATTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAACCAAGATTCATCCAATGACAATAATATCAGGTTTCCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGTTGGAGAAGGTTGTGGACAACAAAGCAGATTCTGAGAAATTCAGGTCAGACTTATTGAACATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGAGCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTACAGGGAAGCACTAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAAAGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGGATAGAGAATGCAAAGATACCGGTGGCAAACACTGCCATGGACACGGACAAAGTGAAGATATATGGTGCACGTGTTCATGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAGCAGCTGAAAAAGAGAAAATGAGAGAAAAGGTGCAGAAGATAATAGTTCACGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTGGCTATTGAGCATGCTGAATTTGATGGTATTGAACGTCTGGCTTTGGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTAACCACCATGTTCTTGATGAGGCTGAGAGTTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGAGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGACAAAGGAAGTCGATGCGTTAGCTAAGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATCCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTACTGAGTTGATTTCTCAGCTCCGTGCAGAGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTGTTGGAGACATGGCTGAACGGGGGATATCCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGAAATCATCACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA	1464	0.4269	MAIDRIFKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVLLAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRSDLLNIAMTTLSSKILSQDKEHFAKLAVDAVMRLQGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKIPVANTAMDTDKVKIYGARVHVDSMARVAQIEAAEKEKMREKVQKIIVHGINCFVNRQLIYNFPEELFADAGILAIEHAEFDGIERLALVTGGEIASTFDNPNHHVLDEAESSLHDALCVLSQTVNDSRVLLGGGWPEMVMTKEVDALAKKTPGKKSLAIEAFSRALLAIPTIIADNAGLDSTELISQLRAEHQKEGCTAGIDVISGSVGDMAERGISEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM	487

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo11g01333	487	NCBIfam	T-complex protein 1 subunit beta	6	335	IPR012716	GO:0005524\|GO:0005829\|GO:0005832\|GO:0006457\|GO:0016887\|GO:0051082
Pumo11g01333	487	ProSitePatterns	Chaperonins TCP-1 signature 2.	58	74	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Pumo11g01333	487	Gene3D	-	27	141	IPR027413	-
Pumo11g01333	487	Gene3D	-	360	476	IPR027413	-
Pumo11g01333	487	Pfam	TCP-1/cpn60 chaperonin family	332	477	IPR002423	GO:0005524
Pumo11g01333	487	Pfam	TCP-1/cpn60 chaperonin family	30	333	IPR002423	GO:0005524
Pumo11g01333	487	CDD	TCP1_beta	6	482	IPR012716	GO:0005524\|GO:0005829\|GO:0005832\|GO:0006457\|GO:0016887\|GO:0051082
Pumo11g01333	487	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	32	48	IPR017998	GO:0140662
Pumo11g01333	487	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	56	74	IPR017998	GO:0140662
Pumo11g01333	487	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	86	105	IPR017998	GO:0140662
Pumo11g01333	487	PANTHER	CHAPERONIN	11	334	IPR017998	GO:0140662
Pumo11g01333	487	SUPERFAMILY	GroEL apical domain-like	206	343	IPR027409	-
Pumo11g01333	487	FunFam	T-complex protein 1 subunit beta	211	362	-	-
Pumo11g01333	487	SUPERFAMILY	GroEL-intermediate domain like	152	359	IPR027410	-
Pumo11g01333	487	ProSitePatterns	Chaperonins TCP-1 signature 3.	86	94	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Pumo11g01333	487	Gene3D	GroEL	211	333	IPR027409	-
Pumo11g01333	487	Gene3D	-	334	359	IPR027410	-
Pumo11g01333	487	Gene3D	-	142	210	IPR027410	-
Pumo11g01333	487	ProSitePatterns	Chaperonins TCP-1 signature 1.	35	47	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
Pumo11g01333	487	FunFam	Chaperonin containing TCP1 subunit 2	142	215	-	-
Pumo11g01333	487	SUPERFAMILY	GroEL equatorial domain-like	13	479	IPR027413	-
Pumo11g01333	487	FunFam	T-complex protein 1 subunit eta	360	477	-	-
Pumo11g01333	487	FunFam	T-complex protein 1 subunit eta	27	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01333	Pumo-Chr11	43244710	43250572	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01333	K09494		-	gmx:100797805	882.478