Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01290 ATGAGCAGAAGCTTGGGAATACCGGTGAAGCTACTCCACGAGGCTTCGGGTCACGTGGTGACGGTTGAGCTCACAAGTGGCGAACTCTACAGAGGGAACATGATCGAGTGCGAGGACAACTGGAACTGTCAACTCGAGAGTATCACCTACACTGCCAAGGATGGAAAAACATCGCAACTTGAGCATGTTTTTATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCTGACATGCTGAAGAATGCTCCTATGTTTAAGCGTTTGGATGCAAGAATCAAGGGCAAGGGTGCATCACTTGGAGTTGGTAGGGGCAGAGCAGTTGCAATGCGAGCAAAGGCTCAAGCTGCTGGCCGTGGAGCTGCACCTGGAAGGGGTGTACCACCAGTGCGGAGCGCTGTGGCTCTAGTGACGCATGTTGCATATGGATACAATTCCAGAGGTGGTGGTGCTGTTACGGGTAAGGTAGCTCGATTTTATTGCAGGGGCTCCATTCCATATGCCATGGATACCCTTTCAAGGATTAGATTCCTCCCCACTTGTTTCAGCCTTCAGTTCCCAAAAATCTCTGCATTGTCTCGTTTCCCAAATGCTATTTCCACCACCACTCCCCTGGTTTCAGTGCTAAGAGTAAGAGCTGGTCCTCCTTCAGTTAGTGATGTGGATGAGGATGTCTTACAAATATTTTTCAAGGAGAGAGAATTAAATGGGGATTTTATATCAAGAGCTTCCGATTTATTATGGAGAAGAAATTTCAGAAATTCTGGTGATTATGATATTAGCGAGCTCACCAACAACACTTCTCAACAAACAGAGCAGATCATAGAGACTGACGGTGACGGTGGTTTTTTGAAACTTACAAGAACCCAAGAGTGGTTAACAGGTGACAATTCTCCACCAACAAACAAGAAGGTGACTGCTAAGGTGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATACGAATCTCTCAAGAGGGAACTTTTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTGGATATTGCTTGGTTATTTTATCCGTACAGGCTGCTATAAGTTATGCAATTGGAGTCCTTTTCAGTTGCTTGTACCTTCAACTCTTGTATCAACATGCAGACAACCTATCCAGTGAAGATGTTCCTCAAATATTCAAGAAAAAGAAGTCAAAGAAAATTGGTATAAGAAGTGAAGACCTTGAAGATTTCTTGGAGAGGACAATCAAGGGTAGCAGTATATCACTCTCATCTCCCAGGCTTGTTATTCCAGCAACAATATATGGACTTTGGATTCTAGTTTCATCAGTATTTTACCAATGA 1329 0.4439 MSRSLGIPVKLLHEASGHVVTVELTSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGAAPGRGVPPVRSAVALVTHVAYGYNSRGGGAVTGKVARFYCRGSIPYAMDTLSRIRFLPTCFSLQFPKISALSRFPNAISTTTPLVSVLRVRAGPPSVSDVDEDVLQIFFKERELNGDFISRASDLLWRRNFRNSGDYDISELTNNTSQQTEQIIETDGDGGFLKLTRTQEWLTGDNSPPTNKKVTAKVLQDSSARRKKLNMLKYESLKRELLLLSVGIGLACSGYCLVILSVQAAISYAIGVLFSCLYLQLLYQHADNLSSEDVPQIFKKKKSKKIGIRSEDLEDFLERTIKGSSISLSSPRLVIPATIYGLWILVSSVFYQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01290 442 ProSiteProfiles Sm domain profile. 7 79 IPR047575 GO:0003723
Pumo11g01290 442 SUPERFAMILY Sm-like ribonucleoproteins 8 125 IPR010920 -
Pumo11g01290 442 SMART Sm3 10 75 IPR001163 -
Pumo11g01290 442 FunFam Small nuclear ribonucleoprotein Sm D3 2 86 - -
Pumo11g01290 442 PANTHER NF-KAPPA-B INHIBITOR-LIKE PROTEIN-RELATED 175 437 - -
Pumo11g01290 442 Pfam LSM domain 11 74 IPR001163 -
Pumo11g01290 442 Gene3D - 3 86 - -
Pumo11g01290 442 CDD Sm_D3 8 77 IPR034099 GO:0000387|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01290 Pumo-Chr11 42617230 42627303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01290 - - gmx:100779185 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01290 11 42617230 42627303 Pumo11g01290 11 42617230 42627303 ECH