Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01281 ATGGCAAGTGTTTCTGCAGTCTCAGCTTCTGTTAGAAGGCTTGAGGGGAAAGTAGCCCTTATCACTGGTGGTGCGAGCGGTATGGGTGAGGTCACTGCAAGACTCTTCTCTAAGCATGGAGCACACGTTGTGATAGCTGATATCCAAGACGATTTGGGTCTCTCTCTTTGCAAACACTTGGAATCCGCTTCCTATGTTCATTGCGATGTGACAAACGAAAAGGACATTGAAAATACCGTGAACACAGCGGTTTCCAAGTATGGCAAACTAGACATCATGCTTAACAACGCTGGTATATGTGATGAGATCAAAACAAGCATACTTGACAACAGCAAGTCTGATTTTGAGAGTGTGATAAGTGTGAACTTGGTTGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGGGTCATGATCCCTGCTAAAAGGGGCTGCATAATTAACATATCTAGTGTTGCTGGATGCATAGGTGGAGGGGCTACACATGCTTACACAAGTTCAAAGCACGCACTAGTGGGACTAACGAAAAACACTGCGGTAGAGCTTGGACAATTTGGTATTCGGGTGAATTGTGTGTCCCCTTATGCGCTTGCCACACCGTTGACAAAGAAATATTACAATCTTGATGAAGATAGAGTTGGTGAGATTTATTCCAACCTAAAGGGTGTTCATCTTGTGCCTAACGATGTGGCCGAAGCTGCTCTTTATTTAGCAGGTGATGAGTCCAAGTATGTTAGTGGTCACAATCTTGTGATAGATGGAGAGTTCACCAATGTAAATGTTGGATTTTCTGTGTTTGGGCAGTCTGATTAA 810 0.4407 MASVSAVSASVRRLEGKVALITGGASGMGEVTARLFSKHGAHVVIADIQDDLGLSLCKHLESASYVHCDVTNEKDIENTVNTAVSKYGKLDIMLNNAGICDEIKTSILDNSKSDFESVISVNLVGPFLGTKHAARVMIPAKRGCIINISSVAGCIGGGATHAYTSSKHALVGLTKNTAVELGQFGIRVNCVSPYALATPLTKKYYNLDEDRVGEIYSNLKGVHLVPNDVAEAALYLAGDESKYVSGHNLVIDGEFTNVNVGFSVFGQSD 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01281 269 FunFam Short-chain dehydrogenase reductase 2 260 - -
Pumo11g01281 269 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Pumo11g01281 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Pumo11g01281 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Pumo11g01281 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Pumo11g01281 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Pumo11g01281 269 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Pumo11g01281 269 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 259 - -
Pumo11g01281 269 Gene3D - 2 266 - -
Pumo11g01281 269 Pfam Enoyl-(Acyl carrier protein) reductase 23 253 - -
Pumo11g01281 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 254 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01281 Pumo-Chr11 42492707 42493627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01281 14 252 Acyl Lipid Metabolism Gene Families AT3G55290 34.524 8.00e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01281 - - gmx:100777055 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01281 11 42492707 42493627 Pumo11g01281 11 42492707 42493627 ECH