Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01276 ATGGCTAGTGTTTCTTCGGTCTCAGCTCCTGTTAGAAGGCTTGAGGGGAAAGTGGCGATTATCACGGGTGGTGTGAGTGGCCTAGGTGCAGCCACTGCAAGACTCTTCTCTAAGAATGGAGCACATGTAGTCATAGCTGATATTCAAGACCATTTGGGTCTATCTGTTTCCAAAGACTTGGAATCTGCTTCCTATGTCCATTGCGATGTGACAAAGGAAGAGGACGTTGAAAACTGCGTGAACACAACGGTTTCCAAGTATGGCAAACTAGATATCATGCTTAATGACGCTGGTATATCTGATGAGATCAAAACAAGCATTCTTGACAACAGCAAGTCTGATTTTGAGAAAGTGATCAATGTTAACTTGGTTGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGGGTCATGATTCCTGCTAAAAGGGGCTACATAATCAACACAGCTAGTGTTGCTGGATGTATAGGTGGAGTGGCACCACATGCCTACACAAGTTCAAAGCACGCACTAGTGGGACTGATGAAAAACACTGCGGTGGAGCTTGGACAACATGGTATTCGGGTAAATTGTTTGTCCCCTTATCTGGTTGCCACACCGTTGACTAAGAAATATTTAAATATTGATGAAGACCGAATTAGTGAGATTTATTCCAACCTAAAAGGTGTTCATCTTGTGCCTAACGATGTGGCCGAAGCTGCTCTTTATTTGGCAAGTGATGAGTTCGTCCAAGGGAAGGATGCAAAGATGTGGTGGGGTATATGGTTTGTGGTTTTGTGGTCGATTTGGGTCCATCGCAATGACATTGTCTTTAACAATGATATTTTAAATGTGGAAGGGGTGTTTGAATTGATTAAAATCAGATCTTGGCAGTGCACCAAAGCTAGAATGAAGCTGGCTTCCACTTCGTTTTATGAATGGTCTTTGTTCTTAAATCTAGTACTCAAACAACCTGCTTTTTATATCTGA 966 0.4265 MASVSSVSAPVRRLEGKVAIITGGVSGLGAATARLFSKNGAHVVIADIQDHLGLSVSKDLESASYVHCDVTKEEDVENCVNTTVSKYGKLDIMLNDAGISDEIKTSILDNSKSDFEKVINVNLVGPFLGTKHAARVMIPAKRGYIINTASVAGCIGGVAPHAYTSSKHALVGLMKNTAVELGQHGIRVNCLSPYLVATPLTKKYLNIDEDRISEIYSNLKGVHLVPNDVAEAALYLASDEFVQGKDAKMWWGIWFVVLWSIWVHRNDIVFNNDILNVEGVFELIKIRSWQCTKARMKLASTSFYEWSLFLNLVLKQPAFYI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01276 321 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 247 - -
Pumo11g01276 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Pumo11g01276 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Pumo11g01276 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Pumo11g01276 321 Gene3D - 3 256 - -
Pumo11g01276 321 Pfam Enoyl-(Acyl carrier protein) reductase 25 244 - -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Pumo11g01276 321 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Pumo11g01276 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 240 IPR036291 -
Pumo11g01276 321 FunFam Short-chain dehydrogenase reductase 2 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01276 Pumo-Chr11 42371015 42374595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01276 11 212 Acyl Lipid Metabolism Gene Families AT1G24360 30.918 3.12e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01276 - - gmx:100794412 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01276 11 42371015 42374595 Pumo11g01276 11 42371015 42374595 ECH