Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01211 ATGACCAACGCTCACAGAATGCGCGTGGCATTCACCGCCGCCGCATTAGCCGCCGCCGCAGCTGCTATCATCTCCGTCTTCTTCGCCGCGCGAAGGCGCAGGCAGAACAAGTCCTCTCCGTGCTATTTACACTCCGAACAGAAACCACAGTGCGCGTTTAAGCGCGTCTTAGCGGATAACTCCTACACTCCGTTCAAGCACCTCAGCAACAACGACGAGAATGCTTCGAATTCGCATCCGTATGAGGCAGAGATTACGGCATTGTTGAAAAATCCTCAGCCTGAAATTGAATTTGGTTCTGAGATCGTGGACTTGGAAATGAAGGATTCATATGTTTGGGTTAATACCGAGATGCAGTTAAAGGAACTGGTTGATGTGTTGAGCGAAGAGAGGTTCTTTGCTGTGGACACGGAACAACATAGCTTACAATCTTTTCTAGGCTTTACAGCATTGATTCAGATTTCTACACGGGAGAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGCGTTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATATGTTGTTAATCTATTTGATACTTCAAAGGCATGTGAAGTGTTGTTGAAACCACAGAAATCACTTGCTTATTTGCTTGAAACATACTGCGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACGAACGGATGCACACTATCTGTTGTATATTGCAAACTGCCTGATTGATGAACTCAAACAACTGGACAATGAAAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATTTGTTTACAACTTTTCAAGAAAGAGATTGAAGCTTCTCCTGGAGAATCTTCTGCATTATCATTATTTTCACGTCAAGTGAGCAATAATGGCTTTCCATCGATTTCAAATGAAGCCCAGATTCAGAATATTGTAAGGCAACTGTGCACATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCTGCGAGTCACTCGGAAATATACAACACCATAGCTCAGGCTGATATCAATATGGAAATGGGTGTCAACTCTTCATCCCTTCCCCATCTCCTGTTGTTTGCAGTCACCTGA 1260 0.4373 MTNAHRMRVAFTAAALAAAAAAIISVFFAARRRRQNKSSPCYLHSEQKPQCAFKRVLADNSYTPFKHLSNNDENASNSHPYEAEITALLKNPQPEIEFGSEIVDLEMKDSYVWVNTEMQLKELVDVLSEERFFAVDTEQHSLQSFLGFTALIQISTREKDYLVDTIALHDFMGVLRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLLKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLIDELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSRQVSNNGFPSISNEAQIQNIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIYNTIAQADINMEMGVNSSSLPHLLLFAVT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01211 419 SMART 35exoneu6 111 279 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pumo11g01211 419 SUPERFAMILY HRDC-like 346 394 IPR010997 GO:0000166|GO:0044237
Pumo11g01211 419 Gene3D - 47 316 IPR036397 GO:0003676
Pumo11g01211 419 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 47 316 - -
Pumo11g01211 419 Pfam HRDC domain 347 389 IPR002121 GO:0003676
Pumo11g01211 419 SUPERFAMILY Ribonuclease H-like 48 281 IPR012337 -
Pumo11g01211 419 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 36 399 IPR045092 GO:0000175|GO:0000467
Pumo11g01211 419 Gene3D HRDC domain 332 410 IPR044876 -
Pumo11g01211 419 ProSiteProfiles HRDC domain profile. 342 419 IPR002121 GO:0003676
Pumo11g01211 419 Pfam 3'-5' exonuclease 111 278 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01211 Pumo-Chr11 41450806 41455566 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01211 K12951 - gmx:100791485 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01211 11 41450806 41455566 Pumo11g01211 11 41450806 41455566 ECH