Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01158 ATGGCTGGAATTGGGTTTGAGGACTTGCTGCCTGTGATGGCCAACAAGCTTGGAGGGGAGGGGCTGATAAAGGAGCTGTGCAACGGGTTCGAGTTGCTGGTGGACAAGGAGAAAGGGGTCATCACGTTGGAGAGTTTGAGACAAAACGCTGCGCTTCTGGGGCTGCAGGACATGAAGGAAGACGAGCTCGTGAGCATGATGAGGGAAGGGGATCTTGATGGAGATGGCGCACTCACCCAGATGGAGTTTTGTGTTTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAGGAGTCCTGGTTCTGGCTTGAAGAGGCTCTCCAACATGAACTCACCAGCAGCAGCAACAGCAACAATAACAATAATAATAACAACTCTTCTATTTAG 384 0.5052 MAGIGFEDLLPVMANKLGGEGLIKELCNGFELLVDKEKGVITLESLRQNAALLGLQDMKEDELVSMMREGDLDGDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHELTSSSNSNNNNNNNNSSI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01158 127 PANTHER CALCIUM-BINDING PROTEIN KIC 5 112 IPR044205 GO:0005509
Pumo11g01158 127 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Pumo11g01158 127 Pfam EF-hand domain pair 37 89 IPR002048 GO:0005509
Pumo11g01158 127 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Pumo11g01158 127 Gene3D - 4 119 - -
Pumo11g01158 127 SUPERFAMILY EF-hand 4 87 IPR011992 -
Pumo11g01158 127 SMART efh_1 62 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01158 Pumo-Chr11 40319559 40320425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01158 6 110 EF-hand Containing Proteins AT4G27280 64.151 1.11e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01158 K24345 - gmx:100527206 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01158 11 40319559 40320425 Pumo11g01158 11 40319559 40320425 ECH