Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01154 ATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCTTCTACTGAAGCAATGGTGAAGGGTTTGCAAGATGTTATGCAAAATCATGGCTATAAAGATTCATCTAATCCTCCAAGCGCATATTCATCCCCTTCTAAAGAACAAGCACACAAGCAAATAAATCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATCTGAATGGCAATTTTTCCTTCGAAAGTGACAGCAACGTTCACCAAACTAGGCGTCTTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGACCAAGGCATAAGGGAAGGTGATGAAGATCTTGGGTTGTCTTATGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGCAGAAAGTATCGTGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAATGTTGAGTTTCAAGTCAGTTCAGGTCTTGCAAATGATGGCTCACTTTTTTCAATAGGAGACCCAATACCTTCAGATAAAGATGCCCGTGAAATTTCTGATACTCTGTTATCTGGTGAATTTGCTGGTGACATTCCTGACCAGACTTCTGTTCCTGGTACCCCATCTCTAAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAAAGATGCTTTTAAACGTGCATTGTCATTGTCAAGATCTTCTGATGATCTTCATGCTTTATGCATGAGGCAGAAAGAGGAATTCATCAATGAGTTTGATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGAGATGGGAAAAACTGAAGATGATGGTCATATGGACAATTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAGGTGATGTCAAAACCCTTCAAGGAGATTCCTCTGTTGACCGTACGGGTGAATTTCCTAACAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAATTGATCTGCAGCATTGTGGACCACCTCTAGAGGAAACAAATGAAGAATTGCCTAAAGTTATTGAACCTTTAGTTGATGTTAACACAGTAAATGGTGTTACTGCTGCCAGTGTGGATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAGAGATATATATCTTCTCTGGGTGCTAATGCCACTGCCGCTCAGCTGGCAAATCATGGGTTGGTTGTGATTCCCTTTTTGAGTGCATTTGTGAGTTTGAAAGTGCTCAATTTAGCTGGAAATGCTATTGTGAGGATAACTGCTGGTGCTCTTCCTCGTGGACTTCACGCGCTGAATTTGTCCAGAAACAAGATCTCCACTATAGAAGGATTACGCGAACTCACACGGCTTCGTGTCCTAGACCTCAGTTACAACCGCATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCCCTGAAAGAGCTGTACCTGGCTGGAAACAAGATCAGCGAAGTTGAGGGTCTGCACCGCCTCTTGAAACTAAGCATCCTGGATCTCCGTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATTCTTTGCAAGCTATCAACTTGGATGGGAACCCGGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATGAAAGTGAGCACTTTGAAGGATGGAGCAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGACCGCAGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGTAGCCACACGAAGGTCATCAGCCAGCCTCCACTCATGCTCGCAGGAGTGTGGATTCACCAAAACTGTCCAAGGGCAAGCAAGCTCTCCTGCCACCAACTAG 1953 0.4306 MFRFSCFHANVQGNKAKKTVQPSTEAMVKGLQDVMQNHGYKDSSNPPSAYSSPSKEQAHKQINHISNWDSVERSCRSEDLNGNFSFESDSNVHQTRRLKKSQSLQSGLDQGIREGDEDLGLSYDGAKSQNESTISISRKYRDANPIDQYGNNPNVEFQVSSGLANDGSLFSIGDPIPSDKDAREISDTLLSGEFAGDIPDQTSVPGTPSLRKSRSLPNIRASILSSEKDAFKRALSLSRSSDDLHALCMRQKEEFINEFDDQIRGDQERENEMGKTEDDGHMDNFFDDGFDSYLLSGSAKDWVMPITDDTGDVKTLQGDSSVDRTGEFPNKDFKIKRIEDWVIDLQHCGPPLEETNEELPKVIEPLVDVNTVNGVTAASVDHKVTPGMEAAKRYISSLGANATAAQLANHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPMKVSTLKDGAERSVRLGMNSHQFDRSLRADRKTTRKGSQGVVATRRSSASLHSCSQECGFTKTVQGQASSPATN 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01154 650 PANTHER NISCHARIN RELATED 226 627 - -
Pumo11g01154 650 FunFam Protein phosphatase 1 regulatory subunit pprA 382 563 - -
Pumo11g01154 650 SMART LRR_sd22_2 465 487 - -
Pumo11g01154 650 SMART LRR_sd22_2 510 534 - -
Pumo11g01154 650 SMART LRR_sd22_2 443 464 - -
Pumo11g01154 650 SMART LRR_sd22_2 488 509 - -
Pumo11g01154 650 SMART LRR_typ_2 510 532 IPR003591 -
Pumo11g01154 650 SMART LRR_typ_2 421 444 IPR003591 -
Pumo11g01154 650 SMART LRR_typ_2 465 488 IPR003591 -
Pumo11g01154 650 ProSiteProfiles Leucine-rich repeat profile. 490 511 IPR001611 GO:0005515
Pumo11g01154 650 MobiDBLite consensus disorder prediction 193 214 - -
Pumo11g01154 650 Pfam Leucine rich repeat 423 478 IPR001611 GO:0005515
Pumo11g01154 650 MobiDBLite consensus disorder prediction 601 621 - -
Pumo11g01154 650 Gene3D Ribonuclease Inhibitor 372 561 IPR032675 -
Pumo11g01154 650 MobiDBLite consensus disorder prediction 83 109 - -
Pumo11g01154 650 ProSiteProfiles Leucine-rich repeat profile. 467 489 IPR001611 GO:0005515
Pumo11g01154 650 MobiDBLite consensus disorder prediction 37 57 - -
Pumo11g01154 650 MobiDBLite consensus disorder prediction 83 133 - -
Pumo11g01154 650 ProSiteProfiles Leucine-rich repeat profile. 445 466 IPR001611 GO:0005515
Pumo11g01154 650 SUPERFAMILY Outer arm dynein light chain 1 414 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01154 Pumo-Chr11 40288224 40290545 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01154 - - gmx:100790061 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01154 11 40288224 40290545 Pumo11g01154 11 40288224 40290545 ECH