Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00877 ATGACTAATGCATCCTCATCACTTCCAATTTTTGCACAGGATGCAAAACCACCCTCAAACTTCACTCGACCCACTGCAAATTTTCATCCTTCCATTTGGGGGGATTATTTCCTTTCCTTTGTTCCTAGTTCCACGGAAGTTGATAGTCACATTAAACAAGTACAACTATTAAAAGAGGACGTGAGGAAGATGCTTGTCTCTCCTATTGATAACAATTTCTCTTGTAAATTAAACTTTATTGATTTAGTCCAACGCTTAGGGGTTTCCTACCATTTTGAAGAAGAAATTGAGGGAGCATTGCACCAGATTTATGACATTTCAACAAAGGACAATAATATCATAACTAACGATGATGATCTTCATCATGTGGCTTTACTCTTTCGATTGCTTAGGCAACAAGGATATCACATTTCATCAAGTGTATTTTACAAATTCAAAGACCAAACTGGAAACTTTAGTGAAAGGGTAGCCAATGATATACAAGGAATGTTGAGCTTGTATGAAGCAACTGAACTAAGATTTCATGGAGAGGAGATACTTGAAGAAGCACACAATTTCACTATCATTCAGTTAACTAAATCCATAGCTGCCCAACCAAGCTCTTTTCTTGCTGCACAAGTGAAGCATAGCTTAAAACGATCACTTCGTAAAGGATTGCCTAGGTTGGAGGCAACATATTATATGTCTTTCTACCAAGATGATCCTTCCCATGATGAAAATTTGCTAACATTTGCAAAACTAGATTTTAATATGCTGCAGGAGCTACATCAAAAAGAAGTCAGCAATATAACCAAGTGGTGGATTAAGGATTTAAATGTCTCAACAAAATTACCATTTGTACGAGATAGGATTGTAGAAGGTTACTTTTGGATTTTGGGAATCTACTTTGAGCCACAATATTCTCTTGTTAGAAGGATAACAACAAAAGTAATTGCTCTATGTTCTATCATTGATGACATGTATGATGCCTATGGAACCATTGATGAACTTGAGCTTTTCACCAATGCAATTGAGAGGTGGGATATTTGCTGCTTGGTTGATCTCCCAGAATACATGAAATTATGTTATATGGAAATTTTGAATGTTTTTGAAGAAATAGAGGAAGAGATGAGAAAGCAAGGAAAATTATACTGCATCAAGTATGCCAAGAAAGAAATGAAAAGACTAGTCAAGGCTCACATGGCTGAGGCAAGATGGCTTCATCGCAACCACACACCAACGATAGAAGAGTACATGCAAGTTAGAATTGTATCAAGTGGTTACCCTATGGTGATTACCATATGTTTCATTGGCATGGAAGATACAACAGAGGAGGTCCTTATATGGGCAACTAGTGACCCAAAAATTATTGTAGGTGCTTCAATTATTAGTAGACTTATGGATGACATTGTTGGAAATGAGTTTGAGCAGGAAAGAGAACACATTTCCTCAAGCATTGAATGCTATATGAAGCAACATAATACCTCAAGGCAAGATGCCATTAAAGAACTACTTAAGATGGTTGAGAGTGCTTGGAAAGACATTAATGAGGCATGCCTTAATCCTATTGAAAGTACCAATGAATTTTCTTTTGCGTGTTGTCAACCTTGTTCGCATGATGGACGTGCTTTACAAAGACGAAGATAA 1626 0.3684 MTNASSSLPIFAQDAKPPSNFTRPTANFHPSIWGDYFLSFVPSSTEVDSHIKQVQLLKEDVRKMLVSPIDNNFSCKLNFIDLVQRLGVSYHFEEEIEGALHQIYDISTKDNNIITNDDDLHHVALLFRLLRQQGYHISSSVFYKFKDQTGNFSERVANDIQGMLSLYEATELRFHGEEILEEAHNFTIIQLTKSIAAQPSSFLAAQVKHSLKRSLRKGLPRLEATYYMSFYQDDPSHDENLLTFAKLDFNMLQELHQKEVSNITKWWIKDLNVSTKLPFVRDRIVEGYFWILGIYFEPQYSLVRRITTKVIALCSIIDDMYDAYGTIDELELFTNAIERWDICCLVDLPEYMKLCYMEILNVFEEIEEEMRKQGKLYCIKYAKKEMKRLVKAHMAEARWLHRNHTPTIEEYMQVRIVSSGYPMVITICFIGMEDTTEEVLIWATSDPKIIVGASIISRLMDDIVGNEFEQEREHISSSIECYMKQHNTSRQDAIKELLKMVESAWKDINEACLNPIESTNEFSFACCQPCSHDGRALQRRR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00877 541 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 237 IPR008930 -
Pumo11g00877 541 Gene3D Farnesyl Diphosphate Synthase 30 523 IPR008949 -
Pumo11g00877 541 FunFam Isoprene synthase, chloroplastic 199 530 - -
Pumo11g00877 541 CDD Terpene_cyclase_plant_C1 23 530 IPR044814 GO:0010333|GO:0016102
Pumo11g00877 541 SFLD Isoprenoid Synthase Type I 239 522 - -
Pumo11g00877 541 Gene3D - 71 237 IPR036965 GO:0010333|GO:0016829
Pumo11g00877 541 SFLD Terpene Cyclase Like 1 C Terminal Domain 239 522 IPR034741 -
Pumo11g00877 541 Pfam Terpene synthase family, metal binding domain 242 507 IPR005630 GO:0000287|GO:0010333|GO:0016829
Pumo11g00877 541 FunFam Isoprene synthase, chloroplastic 71 237 - -
Pumo11g00877 541 SUPERFAMILY Terpenoid synthases 237 517 IPR008949 -
Pumo11g00877 541 PANTHER OS04G0344100 PROTEIN-RELATED 22 515 - -
Pumo11g00877 541 Pfam Terpene synthase, N-terminal domain 32 211 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00877 Pumo-Chr11 32569263 32575447 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00877 K15803 - gmx:100802427 875.159