Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00824 ATGAGGATTAGTATTATTTCCATTACTCTTTTCCTCATAATAACCCATCTCCTTGTGAGGGCAGAACCAATAAGCAGAGCAGATTTTCCAGAGGGGTTTATCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTGTTGATGAAGGAAACAAAGGAGATAGTATATGGGATACTTTCTCAAGGACTCCAGGGAGAATTCTGGACTTCAGCAATGCAGACAAGGCAGTGGATCAATACCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTCCGAAATGGCACAGGGGAACCCAATAAAGAAGGAATAAAATATTACAACAGCCTCATTGATGCTTTACTTGAAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCTCACAAATCATAAAAGATTATGAGCATTATGCCTATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTCTAGGTCGTCTTCTATGTAAGAAGGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTATCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACAACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAGCCCATAACAGAACTTGATGAAGACAAAGATGCAGCAGCAAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCGCTTTTCTTTGGAAAATATCCTCTCTCAATGAAGAAACTTGTAGCTGAGAGATTGCCAGAGATTTCTGATGCAACCTCAAAATTTCTTGTGGGATCTTTGGATTTCATTGGCATAAATCACTACACCTCAGTGTATGCTCGTAACGACAGGATTCGGATTCGTAAACTGGTTATGCAAGATGCTGCTACTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGAGCTGCAATTGGAGAAAAGGCAGCTTCAAGTTGGCTGCACATTGTTCCATGGGGCATCCGAAAGTTGGTAAAACATGTGAAAGACAAATATGGGAACACGCCAGTAATTATAACAGAGAATGGAATGGATGACCCAAGCGGACCCTTTAGGACCTTAGAAAAGGCATTAAAGGATGACAAGAGGATAAGATACCATAGAGACTATCTGTCAAACCTATCTGCTGCTATAAGGGAAGATGATTGCAATGTACGTGGTTACTTTGTATGGTCATTGCTTGATAATTGGGAGTGGAACATGGGATACACCGTACGTTTTGGGCTCTACTATGTGGATTTCAATAACAATCTTACTAGGATACCAAAAGATTCGGTGCAATGGTTCAAAAACATGCTCAGAGTGAAGACAGAACAAATTAGTGAAATTTGA 1527 0.4041 MRISIISITLFLIITHLLVRAEPISRADFPEGFIFGTASSAHQFEGAVDEGNKGDSIWDTFSRTPGRILDFSNADKAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFRNGTGEPNKEGIKYYNSLIDALLEKGIQPFVTLYHWDLPQMLEDKYEGWLSSQIIKDYEHYAYTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGRLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEQQGGQIGIALDVIWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPLSMKKLVAERLPEISDATSKFLVGSLDFIGINHYTSVYARNDRIRIRKLVMQDAATDAAVITTAYRRGAAIGEKAASSWLHIVPWGIRKLVKHVKDKYGNTPVIITENGMDDPSGPFRTLEKALKDDKRIRYHRDYLSNLSAAIREDDCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFNNNLTRIPKDSVQWFKNMLRVKTEQISEI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00824 508 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Pumo11g00824 508 PANTHER GLYCOSYL HYDROLASE 28 502 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 Pfam Glycosyl hydrolase family 1 27 501 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 SUPERFAMILY (Trans)glycosidases 15 498 IPR017853 -
Pumo11g00824 508 FunFam Beta-glucosidase 12 15 500 - -
Pumo11g00824 508 Gene3D Glycosidases 16 500 - -
Pumo11g00824 508 PRINTS Glycosyl hydrolase family 1 signature 471 483 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 PRINTS Glycosyl hydrolase family 1 signature 324 338 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 PRINTS Glycosyl hydrolase family 1 signature 402 410 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 PRINTS Glycosyl hydrolase family 1 signature 447 464 IPR001360 GO:0004553|GO:0005975
Pumo11g00824 508 PRINTS Glycosyl hydrolase family 1 signature 425 436 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00824 Pumo-Chr11 29525711 29531100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00824 19 444 Glycoside Hydrolase AT5G54570 73.302 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00824 K01188 - gmx:100783543 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00824 11 29525711 29531100 Pumo11g00824 11 29525711 29531100 ECH