Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02256 ATGGAAGGTTTGTTGCCTACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCGAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACAAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTTCATCCTTCTGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCAGCAAATATCCCAGAGACTAGCCCTAATGGAGCCATAAACCAGGTCAGATATTCTTGTACAGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAGCCGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCAAAGGTTTGTTCTCTCCTGTGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAGTCAAACAATATCTGGGAGCTATACATACCCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTAAGCAATGAGATCGTTATCTGGGATGCGATGACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCACCAATTGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAAACTGTATAA 900 0.4133 MEGLLPTGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPETSPNGAINQVRYSCTGAMYVTASKDGAIRLWDGITANCVRSITAAHGAAEATSAIFTKDQRFVLSCGKDSTIKLWEVGSGRLVKQYLGAIHTQLRCQAIFNETEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02256 299 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Pumo10g02256 299 PRINTS G protein beta WD-40 repeat signature 61 75 IPR020472 -
Pumo10g02256 299 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Pumo10g02256 299 ProSitePatterns Trp-Asp (WD) repeats signature. 195 209 IPR019775 -
Pumo10g02256 299 SUPERFAMILY WD40 repeat-like 4 296 IPR036322 GO:0005515
Pumo10g02256 299 SMART WD40_4 121 164 IPR001680 GO:0005515
Pumo10g02256 299 SMART WD40_4 35 74 IPR001680 GO:0005515
Pumo10g02256 299 SMART WD40_4 256 296 IPR001680 GO:0005515
Pumo10g02256 299 SMART WD40_4 80 118 IPR001680 GO:0005515
Pumo10g02256 299 SMART WD40_4 167 208 IPR001680 GO:0005515
Pumo10g02256 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 83 IPR001680 GO:0005515
Pumo10g02256 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 42 76 - -
Pumo10g02256 299 Gene3D - 2 132 IPR015943 GO:0005515
Pumo10g02256 299 Pfam WD domain, G-beta repeat 276 296 IPR001680 GO:0005515
Pumo10g02256 299 Pfam WD domain, G-beta repeat 39 74 IPR001680 GO:0005515
Pumo10g02256 299 Pfam WD domain, G-beta repeat 137 164 IPR001680 GO:0005515
Pumo10g02256 299 Pfam WD domain, G-beta repeat 169 207 IPR001680 GO:0005515
Pumo10g02256 299 Pfam WD domain, G-beta repeat 90 113 IPR001680 GO:0005515
Pumo10g02256 299 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 4 299 IPR044633 GO:0005848|GO:0031124
Pumo10g02256 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Pumo10g02256 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
Pumo10g02256 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 217 IPR001680 GO:0005515
Pumo10g02256 299 Gene3D - 133 298 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02256 39 295 Miscellaneous Gene Families AT5G08390 20.463 5.20e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02256 K14406 - gmx:100809908 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02256 10 31431760 31435078 Pumo10g02256 10 31431760 31435078 ECH