Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02010 ATGGTCCGTTTTAGCTATGCCATCTTATGTGGACCGGGGCATATCCTCTGGCGCGAGCCCACCGAATGCCGTTGTGTGGCGCGCGCATTTACCTCCTCCAACGAACGAACTTGCAATTGCAATTTCCAAAACCAAGTAGAGTCTCCAATTCAGCGAGACGAGAATGAGATTGCGTGCGACGTCGTCGTTTTAGCGCCACCAGCCATGACTGACTCCGATTCTGGTTCTGCTTCTGCTCCTCTCCACTGGAAGTTCTCTCAAGTACTCGGCCAACGACTTCCCAACGAGCATCTCCAAAACGACGACATCATAACCACCGTTGCGTTCGAGAAGCGCGGCGATTATCTCGCCGTCGGCGATCGAGGAGGACGCGTTATAATATTCGAACGAGATGATCGGAAAAAGAATGCTTCGAATAACCGAAGAGATTTGGAGCAGCTGGATTTCGCGACTTCGCGGCATCCCGAATTTCGTTACAGGACAGAATTTCAGAGCCACGAGCCCGAGTTTGATTACCTAAAGAGTGTGGAAATTGAAGAAAAGATTAACAAAGTAAGGTGGTGGATGTCCCACGACAGTTTGCAATTTATTCTTTCAACCAACGACAAAACAATTAAATTGTGGAAGGTTAAGGAACATAAGGTGAAACAAGTTAAAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCTGAAAGAAGTTTCGTACCAGGGCTGGAAACCAAGTCTGCTGCTAATGGCTATCGTTTGGAATGGATAGAGAAGACACCTCAGAATCATTTGCCGCCTCAAGACATTGATGGCAAGATTGATGGAATGGAAGACCCTGTTCGTGCAAAGTGCCAAAAGGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCAGCAGACGATCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCGTCAAACATGGAGGATCTTACCGAGGTTATAACATCAGCTGAATTCCATCCTTTACATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGTCTATCTGATTTGCGACATGCAGCAATATGTGACCATGCTTCTAGAATATTTCAACATGGAGAGAGTTATGGATCAAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTATGGAGTCATCTCCAGTTGCGATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGTTATATAATAATGACTGCATATTTGATAAATTCGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATCTCTTGCGGATATTCTCCCTGGGTTCTGGAAAGGAGGAAGGGGTCAAACTAGAAATTAGAGGAAATTCTGACAGGTAA 1515 0.435 MVRFSYAILCGPGHILWREPTECRCVARAFTSSNERTCNCNFQNQVESPIQRDENEIACDVVVLAPPAMTDSDSGSASAPLHWKFSQVLGQRLPNEHLQNDDIITTVAFEKRGDYLAVGDRGGRVIIFERDDRKKNASNNRRDLEQLDFATSRHPEFRYRTEFQSHEPEFDYLKSVEIEEKINKVRWWMSHDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAERSFVPGLETKSAANGYRLEWIEKTPQNHLPPQDIDGKIDGMEDPVRAKCQKVYAYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGFIRLSDLRHAAICDHASRIFQHGESYGSKSFFTEITSSISDIKFLNDGQHLISRNYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNLLRIFSLGSGKEEGVKLEIRGNSDR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 108 128 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 318 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 458 484 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 432 457 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 403 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 404 431 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 375 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 185 213 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 SUPERFAMILY WD40 repeat-like 100 492 IPR036322 GO:0005515
Pumo10g02010 504 Gene3D - 276 503 IPR015943 GO:0005515
Pumo10g02010 504 Pfam WD domain, G-beta repeat 282 319 IPR001680 GO:0005515
Pumo10g02010 504 PIRSF PPA2_B55 74 503 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 Gene3D - 73 228 IPR015943 GO:0005515
Pumo10g02010 504 SMART WD40_4 280 319 IPR001680 GO:0005515
Pumo10g02010 504 SMART WD40_4 431 485 IPR001680 GO:0005515
Pumo10g02010 504 SMART WD40_4 169 209 IPR001680 GO:0005515
Pumo10g02010 504 SMART WD40_4 389 427 IPR001680 GO:0005515
Pumo10g02010 504 SMART WD40_4 323 370 IPR001680 GO:0005515
Pumo10g02010 504 SMART WD40_4 91 129 IPR001680 GO:0005515
Pumo10g02010 504 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 79 499 IPR000009 GO:0000159|GO:0019888
Pumo10g02010 504 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 99 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02010 Pumo-Chr10 26507368 26513563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02010 K04354 - gmx:100795137 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02010 10 26507368 26513563 Pumo10g02010 10 26507368 26513563 ECH