Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01990 ATGTTGATTCCGTTTGAATGGCTCCATTCCGAACTCAGCAACATTTGTAAGTCCCTCTTGAGGGCGAAGCAGTTACACGCATTCCTTTTGAAAACCCATCTCTCACAAGACCCCTTTTACGCAACAAAAATTGTTAGGCTCTACGCAGCCAACAATGACATTAACTCTGCCTACCATGTGTTCGACAAAACTTCCGACCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTCGCGCAGTCCCAAAGATTTTTCAATGCGATTTCTCTGTTTAGAACCTTGCTTGGGGCTGACATAAGTCCTGATGGTCACACTTATGCTTGTGTTATACGTGCGTGTGCTGACAACTTTGATTTCGGTATGCTAAGACGTGTTCATGGAGGTGCTGTGGCTACAGGGTTTGGACTGGACCCTGTTTGTTGCAGTGCACTTGTGACTGCTTATTCAAAACTAGGCCTTGTTCATGAAGCGCGTAGGGTGTTCGATGCGATCACTGAACCGGACTTAGTTTTGTGGAATTCGTTGATTTCTGGTTATGGGGGCTTTGGTCTGTGGGATGTGGGTATGCAGATGTTTAACGCGATGAGACTTGTGGGGAAGAAGCCTGATGGATATACACTGGCTGGGTTGCTTGTGGGTATTGCGGATTCTGGAGTGCTGAGCATTGGCCAAGGATTACATTGTTTGAGTCAGAAGAGTGGGCTTGATTCTGATTCTCATGTTGGTAGTTTGCTGGTGAGTATGTACTCGAGATGTAAGCACATGGCTTCGGCATATAGAGTCTTTTGTAGTATTTTGAATCCTGATTTAGTCACACGGTCTGCTCTTATAGTTGGGTATTCTCAGTCCGGGGAGTATGAGAAGGTGCTGCTCTTTTTCAGGAAATTAAACATGGAAGACAAGAAGCCGGATTCTGTTTTGATTGCCAGTGTATTGGCTTCTATTGCTCAGATGGCAAATGTAGGACTCGGATGTGAGGTGCATGGTTATGCTTTTCGGCATGGATTGGAATTAGATGTCAAGGTCTCCTCTGCTCTAATAGACATGTATTCAAAGTGTGGTTTCTTGCACTTGGGAATTTGTGTTTTCAGGATAATGCCAGAACGGAATATTGTTTCTTATAATTCAGCAATTTTGGGTTTTGGCTTGCATGGATGTGCTTCCGAGGCTTTCAGGATGTTTGATACAATGCTGGAGAGAGGATTGGTACCCGATGAAGCCACATTCTCTTCTCTCCTATGTGCCTGTTGTCATGCTGGACTTGTCAAAGATGGCCGGGAGATTTTCCAGAGAATGAAATATGAATTTAACATCAGAGCTAGGCCAGAGCACTATGTTTACATGGTGAAGCTCCTTGGCAGTGCTGGGATGCTGGAAGAGGCTTACAATCTGACCCAGTCCTTACCAGAACCTGTAGACAAGGCTATCCTAGGAGCCTTATTATCATGCTGTAATTCTTGTGGAAATTCTGAGCTGGCAGAAACTGTAGCACAGCAGCTTTTTGAAAGTAGTCCTGCCGATAGTGTTTACAGGGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGATAAATTGACAGGAGGTCTGAGAAAAATGCCCGGACTAAGCTGGATTGAAGGCAGTTAG 1656 0.4469 MLIPFEWLHSELSNICKSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAYHVFDKTSDRSVYLWNSMIRAFAQSQRFFNAISLFRTLLGADISPDGHTYACVIRACADNFDFGMLRRVHGGAVATGFGLDPVCCSALVTAYSKLGLVHEARRVFDAITEPDLVLWNSLISGYGGFGLWDVGMQMFNAMRLVGKKPDGYTLAGLLVGIADSGVLSIGQGLHCLSQKSGLDSDSHVGSLLVSMYSRCKHMASAYRVFCSILNPDLVTRSALIVGYSQSGEYEKVLLFFRKLNMEDKKPDSVLIASVLASIAQMANVGLGCEVHGYAFRHGLELDVKVSSALIDMYSKCGFLHLGICVFRIMPERNIVSYNSAILGFGLHGCASEAFRMFDTMLERGLVPDEATFSSLLCACCHAGLVKDGREIFQRMKYEFNIRARPEHYVYMVKLLGSAGMLEEAYNLTQSLPEPVDKAILGALLSCCNSCGNSELAETVAQQLFESSPADSVYRVMLSNIYAGDGRWDDVKKLRDKLTGGLRKMPGLSWIEGS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01990 551 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 342 551 - -
Pumo10g01990 551 FunFam Pentatricopeptide repeat-containing protein 226 329 - -
Pumo10g01990 551 Pfam PPR repeat 272 297 IPR002885 -
Pumo10g01990 551 Pfam PPR repeat 140 164 IPR002885 -
Pumo10g01990 551 Pfam PPR repeat 171 197 IPR002885 -
Pumo10g01990 551 Pfam PPR repeat 71 95 IPR002885 -
Pumo10g01990 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Pumo10g01990 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Pumo10g01990 551 Pfam E motif 490 549 IPR046848 -
Pumo10g01990 551 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 549 IPR046960 GO:0003723|GO:0009451
Pumo10g01990 551 Pfam PPR repeat family 370 419 IPR002885 -
Pumo10g01990 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Pumo10g01990 551 FunFam Putative pentatricopeptide repeat-containing protein At1g64310 4 124 - -
Pumo10g01990 551 Gene3D Tetratricopeptide repeat domain 126 222 IPR011990 GO:0005515
Pumo10g01990 551 Gene3D Tetratricopeptide repeat domain 225 329 IPR011990 GO:0005515
Pumo10g01990 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Pumo10g01990 551 Gene3D Tetratricopeptide repeat domain 385 551 IPR011990 GO:0005515
Pumo10g01990 551 Gene3D Tetratricopeptide repeat domain 8 125 IPR011990 GO:0005515
Pumo10g01990 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Pumo10g01990 551 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Pumo10g01990 551 NCBIfam pentatricopeptide repeat 409 434 IPR002885 -
Pumo10g01990 551 NCBIfam pentatricopeptide repeat 70 103 IPR002885 -
Pumo10g01990 551 NCBIfam pentatricopeptide repeat 373 407 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01990 Pumo-Chr10 26278428 26280083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01990 28 549 Glycoside Hydrolase AT3G49170 30.377 1.97e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01990 - - gmx:100820049 1044.26