Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01949 ATGGCTTTAGCTGGTTATTGGGGAGGTGTACTCCCATCATCAGATGCAATGAATAAATATAATCCAAAGATTTTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGACATAGCCATGGACAGCTTGGAAAAATATGGAGTGGGAATTATTGACCCACAAAAACTATATGACTTTTACAATGACTACCACAGTTACCTTGCAAGCTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGACGTGTTTCATTGACCAAACGGTATCAAGAAGCACTGGAGCAATCTGTAACAAGGAACTTTAAGGACAACAACCTCATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGTTCAAAGAATAGTGCAGCAGCAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTTCAGACCTTACACATAGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAAATTTTTGTGCCAGACTGGGACGTGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAATAGGTGGTTGTCCAGTATATGTTAGTGACAAGCCTGGCAATCATGATTTTAAAATCCTCAAGAAGCTAGTGCTGCCTGATGGATCAGTCTTGAGAGCAAGATATGCTGGCCGTCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAATTTGAATGCTCTGACTGGGGTGGTAGGCGTCTTCAATTGCCAAGGAGCAGGAAGCTGGCCACTGAAATCATTGGAAGCCGCACCCTCGCGCATAACCATCTCAGGGAAAATGAGACCCCTTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGATTGCATAGTCTATGCCTTCAATGCAGGCATGCTTTCCAAGGTGTCAAGCAGAGGAAAAGTTGAAGTGTCCTTAGAGACTCTCCAATGTGAAATATATACAGTATCTCCCATAAGGGTGTTTGGTCATGATGTGCAATTTGCACCAATAGGATTGCTTGATATGTACAATTCAGGAGGAGCAGTAGAAGCCTTGGACTGCACCATGGATGTTGCACAGTGCATGATAAAAATCAAAGGCAGAGGATGTGGCCGTTTTGGAGTCTACTCCAACGTTAGACCAAAACGTTGTGTAGTGGACACGAAGGAGGAGGAGTTCTCCTACAACCCTGAAGATGGATTATTGACTATTATTACACTTGGTGGTGAAGGCAATTCATCAAGGGACATAGAATTTGTATACTGA 1329 0.4327 MALAGYWGGVLPSSDAMNKYNPKILYPIQSPGTTGNLRDIAMDSLEKYGVGIIDPQKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLTKRYQEALEQSVTRNFKDNNLICCMCHNSDSIYSSKNSAAARASEDFMPREPTFQTLHIASVAFNSLLLGEIFVPDWDVFHSKHETAEFHAAARAIGGCPVYVSDKPGNHDFKILKKLVLPDGSVLRARYAGRPTRDCLFEDPVMDGKSLLKIWNLNALTGVVGVFNCQGAGSWPLKSLEAAPSRITISGKMRPLDVEFLEEVAGENWNGDCIVYAFNAGMLSKVSSRGKVEVSLETLQCEIYTVSPIRVFGHDVQFAPIGLLDMYNSGGAVEALDCTMDVAQCMIKIKGRGCGRFGVYSNVRPKRCVVDTKEEEFSYNPEDGLLTIITLGGEGNSSRDIEFVY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01949 442 PANTHER - 1 426 IPR008811 -
Pumo10g01949 442 Pfam Raffinose synthase or seed imbibition protein Sip1 2 425 IPR008811 -
Pumo10g01949 442 SUPERFAMILY (Trans)glycosidases 48 217 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01949 Pumo-Chr10 25683942 25685892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01949 2 429 Glycoside Hydrolase AT1G55740 53.009 8.40e-154 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01949 - - gmx:100816978 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01949 10 25683942 25685892 Pumo10g01949 10 25683942 25685892 ECH