Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01931 ATGCGAAACCTAACTGACACACAAGAAATGGCGGAGAAGTTGGGAGCAGCAGAAGAGAGCTCTAATTTGAAGGCTCTTCACCATACGACAACGAAGCTCGTCGTTTTGGCAGACCTCAACGTCGATCCTCCCGAAGCCGAAGCCGAAGCCGAAGAAGACGATTCTTCTCTTGTCCCTCCTCCACCAATTACCATTTTGGCAAATGACGAAAACAGTCAAGATAAAAGTTCGTTGTCCAAAGACACTGATAGCATTGAAGGCGAAAGTAAGAAGTTGAACAAACTGGGCAAAAGCCGCTCCAGAAAGACAGATTCTTCTCTTGATTGTGTAGCTGATGTGGATGGTGATCAACATGTTCAAGGGCCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCACGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGTTGGCTTATGAGAAGGCAGAAGAGATCTTGCTCAGGCCTGAGGCTGAGATTGACAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATAAAGAACTTGAACCTCATGAACTTGAAGAGATTCTTTCTAAGCTGAAAGAGTCAGTGAAGTCAGATATCAGACAGACAGCTGTATGGAACACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGTCCATTGCACCTGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCCGCAAAATGTTTCCAAGAATTGATTTTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTTGTAGCAGGTCCTGGTGCAAGTGCTGCTGAAGGTGCCACAACTGATCAGATCATGGCTGCTAATGTTGCCAAGGAATGTTTGTTGGCTGCAATTAAAGCAGATAGCAAATCAGCCCATGTCTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCCAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACCACTTTCTTGTGCTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGATTCATCCCTGGTTGAGATTCCAATAGCATGGTCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGCGGCAGCATATGAAAGTGAACAGCATGGGCTGAGAGAAGTTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCTATAGCAGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTGGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACCTCAAAGCCACTGTTGCCTGTGACAAGGATTGCAGCTATGCATGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAAGAACCTTCACAAGCTGAAGAAGTATACAAGCAAGCATTGTCTTTGGCAACTACTCAACAAGCGCATGCTATATTATCCAACTTGGGAATTCTCTATCGGCATCAGAAACAATATCAACGCGCGAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCTGGGTATGCTCCTGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTTGGAAGAGGCCAAGTATTGTTTTGACAAAGCCCTCCAATCAGATCCATTGCTGGATGCAGCTAAGTCTAATTTGATTAAGGTGGTTGCCATGTCGAAGTTATGCAAAGGCCTCTCCTCATGCGCTCTTAAAGAATGA 1968 0.439 MRNLTDTQEMAEKLGAAEESSNLKALHHTTTKLVVLADLNVDPPEAEAEAEEDDSSLVPPPPITILANDENSQDKSSLSKDTDSIEGESKKLNKLGKSRSRKTDSSLDCVADVDGDQHVQGPPSSREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILSKLKESVKSDIRQTAVWNTLGFILLKTGRVQSAISVLSSLLSIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGPGASAAEGATTDQIMAANVAKECLLAAIKADSKSAHVWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPSEPLSCAGNEMASIIRDGDSSLVEIPIAWSGLAMVHKAQHEIAAAYESEQHGLREVEERAVCSLKQAIAEDPNDAVQWHQLGVHSLCARQFKTSQKYLKATVACDKDCSYAWSNLGVSLQLSEEPSQAEEVYKQALSLATTQQAHAILSNLGILYRHQKQYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFDKALQSDPLLDAAKSNLIKVVAMSKLCKGLSSCALKE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01931 655 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 31 651 - -
Pumo10g01931 655 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 561 594 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 362 395 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 442 475 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 148 181 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 525 558 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 273 306 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 595 628 IPR019734 GO:0005515
Pumo10g01931 655 SMART tpr_5 239 272 IPR019734 GO:0005515
Pumo10g01931 655 SUPERFAMILY TPR-like 474 626 IPR011990 GO:0005515
Pumo10g01931 655 Gene3D Tetratricopeptide repeat domain 561 639 IPR011990 GO:0005515
Pumo10g01931 655 ProSiteProfiles TPR repeat profile. 595 628 IPR019734 GO:0005515
Pumo10g01931 655 Pfam Tetratricopeptide repeat 249 308 - -
Pumo10g01931 655 Gene3D Tetratricopeptide repeat domain 474 560 IPR011990 GO:0005515
Pumo10g01931 655 Gene3D Tetratricopeptide repeat domain 339 429 IPR011990 GO:0005515
Pumo10g01931 655 SUPERFAMILY TPR-like 347 405 IPR011990 GO:0005515
Pumo10g01931 655 Pfam Tetratricopeptide repeat 527 591 - -
Pumo10g01931 655 SUPERFAMILY TPR-like 142 318 IPR011990 GO:0005515
Pumo10g01931 655 ProSiteProfiles TPR repeat profile. 561 594 IPR019734 GO:0005515
Pumo10g01931 655 Pfam Tetratricopeptide repeat 362 395 IPR019734 GO:0005515
Pumo10g01931 655 Pfam Tetratricopeptide repeat 595 626 IPR019734 GO:0005515
Pumo10g01931 655 MobiDBLite consensus disorder prediction 74 111 - -
Pumo10g01931 655 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515
Pumo10g01931 655 Gene3D Tetratricopeptide repeat domain 133 321 IPR011990 GO:0005515
Pumo10g01931 655 MobiDBLite consensus disorder prediction 1 25 - -
Pumo10g01931 655 MobiDBLite consensus disorder prediction 38 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01931 476 627 Glycosyltransferase AT3G04240 25.490 1.66e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01931 - - gmx:100820184 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01931 10 25467769 25474429 Pumo10g01931 10 25467769 25474429 ECH