Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01883 ATGAGACGGCCATGGAAGCATTTTAAGAAAAAACATGATCTCTTTGAATGTCTACCAGACGATCTCGTCGTCTTTATTCTCTCTAAGCTCAGCTCCACCGCTTCTTCTCCTTCCGATTTCATCAACGTCATCTTAACATGCAAGAGGTTAAACCGGTTAGGCCTGCAACGTCTTGTGTTATCTAAAGCTGGGCCTAAAGTATTCACCATAAAGCCTAAAAACTGGTCAGAACATGCTCACTCCTTTCTCAAACACTGCGCTAACGCCGGTAACGTGGACGCATGTTACACTCTCGGAATGATCCGATTTTACTGTTTGAAAAATCGAGGAAGCGGGCTTTCGTTGATGGCGAAGGCAGCCATGAAGTTGCACGCGCCGGCTCTGTACTCGCTGGCGGTAATTCAGTTCAACGGGAGTGGTGGTTCTAAGCGCGACAAAGATCTACGCGCGGGCGTGGCCTTGTCGGCGCGTGCATCGTTGCTCGGTCACATCGACGCGCTTCGGGAGTTAGGCCATTGCCTTCAGGACGGTTACGGCGTTCGGCAGGATGTAACGGAGGGGAGAAGACTCCTGGTGAAGGCCAACGTGCGCGAGCTCGCGTATGTCCTACGCGCGGTGGCGCCTTCGCGTTGCGATTCCTCTTTGCTGACATGGCGTGCTCCGAGATGTCAAAGGAACACGGTGACATCATGTCCGTTGCTGAGTGACTACGGGTACAACGTGGCGGTGCCGGAGGTGCAGCCGGCGAACTGGTTTCTGAGAGAGTGGTTTGAGTCTGGTAAAGGAAAATTGGAAGAAGAACTCAGGCTTTGCGCGCACATTGGGTGTGGTCGACCGGAGACGCGGCCGCACGAGTTTCGACGGTGTTCGGTTTGCGGCAAAGTGAACTATTGTTCTCGGGGATGTCAAGCGCTGGATTGGAAGTTGCGGCATAAAATGGAGTGTTCGCCAATAGAGATGATGTATGGTGGAGGTGACGGTGGTGTCGATGTGGAAGATGAGTTTGTGGTCCCGAACGATGCCGTTTGA 1029 0.5287 MRRPWKHFKKKHDLFECLPDDLVVFILSKLSSTASSPSDFINVILTCKRLNRLGLQRLVLSKAGPKVFTIKPKNWSEHAHSFLKHCANAGNVDACYTLGMIRFYCLKNRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQDVTEGRRLLVKANVRELAYVLRAVAPSRCDSSLLTWRAPRCQRNTVTSCPLLSDYGYNVAVPEVQPANWFLREWFESGKGKLEEELRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECSPIEMMYGGGDGGVDVEDEFVVPNDAV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01883 342 Gene3D - 261 319 - -
Pumo10g01883 342 FunFam Predicted protein 264 320 - -
Pumo10g01883 342 SUPERFAMILY HCP-like 77 194 - -
Pumo10g01883 342 Gene3D Tetratricopeptide repeat domain 64 208 IPR011990 GO:0005515
Pumo10g01883 342 CDD F-box_SF 16 53 - -
Pumo10g01883 342 Pfam MYND finger 276 315 IPR002893 -
Pumo10g01883 342 ProSiteProfiles Zinc finger MYND-type profile. 273 315 IPR002893 -
Pumo10g01883 342 SUPERFAMILY HIT/MYND zinc finger-like 269 318 - -
Pumo10g01883 342 SUPERFAMILY F-box domain 11 71 IPR036047 GO:0005515
Pumo10g01883 342 PANTHER MYND DOMAIN-CONTAINING 7 323 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01883 Pumo-Chr10 24866013 24867634 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01883 - - gmx:100781713 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01883 10 24866013 24867634 Pumo10g01883 10 24866013 24867634 ECH