Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01833 ATGTTTGAGCGTTTCACTGAGAAAGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAGATTCTATTGGGTCTTATTGGTGAAGGCACCGGTATTGCTGCTAAGGTTCTAAAGTCAATGGGGATCAACCTTAAAGATGCACGTGTGGAAGTAGAGAAGATAATTGGAAGGGGTAGTGGATTTGTGGCTGTTGAGATTCCGTTTACTCCCCGTGCAAAGCGTGTTTTAGAACTTTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCTGAGCACCTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTGGAAAACCTGGGTGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCCGACAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCGGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCAGCAAATTGAACGTGTGACTCAAATTTTAGGTCGTCGGACTAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGAAAAAAGGTCATAACCCTCGACATGGGTCTGCTTGTTGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGACGAGATAATACTTTTTATCGATGAAGTGCACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCTGCTAACATACTAAAGCCAGCTCTTGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTAGATGAATACAGGAAGCACATTGAAAAAGATCCTGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATATTGAAAGGACTTAGAGAACGATATGAAATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCGTACCAGTATATCAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTGATAGATGAAGCTGGTTCGCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTGAGAGATAAAGAAATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGGGATGAAGGTCCTATTGTGACTGAAGCTGACATACAGCATATTGTCTCATCCTGGACAGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGTCGGGCTATCCGTCGAGCTCGGGTTGGATTAAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATACTACTTTGGCTCTGAAGAAGCTATGATTCGGCTTGATATGAGTGAATTTATGGAAAGACACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGTCAATTGACTGAGGCAGTTCGCCGTCGGCCTTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGACGGAAGACTCACAGACAGTAAGGGCAGAACAGTGGATTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGCTATAACAGAATCAAGAGCCTGGTGACTGAGGAGCTGAAACAATACTTCAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATTGTCTTCAGGCAACTCACAAAACTGGAGGTGAAGGAGATTGCTGACATAATGCTCAATGAGGTGTTTGATAGACTGAAGGTGAAAGATATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGAGTGGTGGAGGAAGGTTATAATCCTAGTTATGGAGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGCGATTCTGTCATAGTGGATGTTGATTCTGATGGTAATGTGATTGTGCTCAATGGTAGCAGTGGAGCCCCCGAGTCCTTACCAGAGGCACTTCCTGTATAA 2499 0.4446 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDKEMDLKAQISTLVEKGKEMSKAESEAGDEGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFDRLKVKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01833 832 ProSiteProfiles Clp repeat (R) domain profile. 2 144 IPR004176 -
Pumo10g01833 832 SMART AAA_5 202 342 IPR003593 GO:0016887
Pumo10g01833 832 SMART AAA_5 545 726 IPR003593 GO:0016887
Pumo10g01833 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 812 IPR027417 -
Pumo10g01833 832 Coils Coil 415 435 - -
Pumo10g01833 832 FunFam ATP-dependent Clp protease ATP-binding subunit 346 431 - -
Pumo10g01833 832 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 656 670 IPR001270 GO:0005524
Pumo10g01833 832 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 594 612 IPR001270 GO:0005524
Pumo10g01833 832 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 549 567 IPR001270 GO:0005524
Pumo10g01833 832 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 623 641 IPR001270 GO:0005524
Pumo10g01833 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 439 IPR027417 -
Pumo10g01833 832 Gene3D - 725 822 - -
Pumo10g01833 832 Pfam ATPase family associated with various cellular activities (AAA) 207 323 IPR003959 GO:0005524|GO:0016887
Pumo10g01833 832 Coils Coil 256 276 - -
Pumo10g01833 832 FunFam ATP-dependent Clp protease subunit 498 723 - -
Pumo10g01833 832 ProSitePatterns Chaperonins clpA/B signature 1. 297 309 IPR018368 GO:0005524
Pumo10g01833 832 CDD RecA-like_ClpB_Hsp104-like 506 722 - -
Pumo10g01833 832 CDD AAA 185 337 - -
Pumo10g01833 832 Gene3D - 153 345 IPR027417 -
Pumo10g01833 832 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 1 149 - -
Pumo10g01833 832 Pfam AAA domain (Cdc48 subfamily) 544 718 IPR003959 GO:0005524|GO:0016887
Pumo10g01833 832 Gene3D UVR domain 411 475 - -
Pumo10g01833 832 ProSiteProfiles UVR domain profile. 419 454 IPR001943 GO:0005515
Pumo10g01833 832 Pfam C-terminal, D2-small domain, of ClpB protein 725 805 IPR019489 -
Pumo10g01833 832 Pfam AAA lid domain 345 447 IPR041546 -
Pumo10g01833 832 FunFam Chaperone clpB 1, putative 153 345 - -
Pumo10g01833 832 Gene3D - 1 150 IPR036628 -
Pumo10g01833 832 SUPERFAMILY Double Clp-N motif 3 144 IPR036628 -
Pumo10g01833 832 PANTHER ATP-DEPENDENT CLP PROTEASE 6 812 - -
Pumo10g01833 832 Gene3D - 347 491 - -
Pumo10g01833 832 Gene3D - 497 723 IPR027417 -
Pumo10g01833 832 SMART ClpB_D2_small_2 725 815 IPR019489 -
Pumo10g01833 832 FunFam ATP-dependent chaperone ClpB 725 818 - -
Pumo10g01833 832 Pfam Clp amino terminal domain, pathogenicity island component 16 68 IPR004176 -
Pumo10g01833 832 Pfam Clp amino terminal domain, pathogenicity island component 92 143 IPR004176 -
Pumo10g01833 832 ProSitePatterns Chaperonins clpA/B signature 2. 579 597 IPR028299 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01833 Pumo-Chr10 24118918 24124294 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01833 K03696 - gmx:100804035 1558.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01833 10 24118918 24124294 Pumo10g01833 10 24118918 24124294 ECH
Pumo6g00566 6 7139139 7146926 Pumo10g01833 10 24118918 24124294 PCT