Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01701 ATGGAGCTAAGCAGGCCTGGTTCCAGGGACAATTCTGGTTCATCAGTTAAAATTGTTACTGCTTCCAAGTTTCCGGGGCTCAACACTCTTGGCCTCGCAATTGGTAGAATTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAATCACCCTAGAGCCACCGAGATGATCTTTCTCAGCAAAGGGACTTTGGTGGCTGCGTTTCTCAACACTCAGAACCAGCTCTTCCAGAAGACTCTCAACCCTGGTGGTGTGTTTGTGATCCCCAAAGGGTTGTTTCACTTCTTCTTAAACCGTGGTGCACAAGCTGCAACTGTGTTCTCTGTGTTTAACAGCCAAAATCCCGGGCTGGGGTCCCTCACTCCAATACCTTCTGGTACATTGGAATCAGTTGAGAAGCTCAAGAGGAAGGTTATTGCACTTTCTGACTCAGAACTTCATGGTGTTAGTGACTTGACTTCGGCACTGTTGGATATCATTTATAGTACTTAA 492 0.4675 MELSRPGSRDNSGSSVKIVTASKFPGLNTLGLAIGRIDIEVDGLVNLHNHPRATEMIFLSKGTLVAAFLNTQNQLFQKTLNPGGVFVIPKGLFHFFLNRGAQAATVFSVFNSQNPGLGSLTPIPSGTLESVEKLKRKVIALSDSELHGVSDLTSALLDIIYST 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01701 163 PRINTS Germin signature 78 98 IPR001929 GO:0030145
Pumo10g01701 163 PRINTS Germin signature 48 68 IPR001929 GO:0030145
Pumo10g01701 163 PRINTS Germin signature 111 126 IPR001929 GO:0030145
Pumo10g01701 163 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 121 - -
Pumo10g01701 163 Gene3D Jelly Rolls 1 149 IPR014710 -
Pumo10g01701 163 CDD cupin_OxOx 3 138 IPR001929 GO:0030145
Pumo10g01701 163 SUPERFAMILY RmlC-like cupins 9 122 IPR011051 -
Pumo10g01701 163 ProSitePatterns Germin family signature. 43 56 IPR019780 GO:0030145
Pumo10g01701 163 SMART Cupin_1_3 1 140 IPR006045 -
Pumo10g01701 163 Pfam Cupin 6 119 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01701 Pumo-Chr10 22389674 22390870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01701 3 117 Miscellaneous Gene Families AT1G72610 41.379 1.98e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01701 - - ccaj:109807530 272.707