Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01634 ATGGCGACAAAAGCTTTGTCCTTCGCTCTGTCTCTCAATGACCTCACCAACCGCTTCTCTTCCAATACGCCACACTCCGCCGCCAAAGTTTCCGTCTTTACCGTCAGATGCTCTTCGGGTAGTGGAGAGAGGCCTTGGAAAAATTCAGATGCTAGACTTGTTCTAGAAGATGGTTCAATTTGGAAAGCTAAATCGTTTGGTGCTTCAGGGACACAAGTTGGCGAAGTTGTTTTTAATACATCATTGACAGGGTATCAAGAAATTTTGACAGATCCTAGTTATGCCGGCCAATTTGTGCTCATGACAAACCCACATATTGGGAATACTGGCATAAATTTTGATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGTATCAGTACCTCTAACTGGCGATGTGCGAAGGCTCTTGGGGATTATTTAGCTGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCAATCACGCGCAGATTGCGGCAAGATGGCAGTCTTATTGGTGTCTTGAGCACTGACAATTCCAAAATGGATGAGGAACTGCTTCAGATGTCTAAGTCATGGGACATTGTTGGTAAGGATCTAATAAGTGGAGTATCATGCAAAACTCCACATGAATGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTTCCAGTAGAGTGCCTGGAGAGACTTTCCATGTAGTTGCTTTTGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATGTACATGGTCAGCATCAGAAACTTTGAAGATGAAGCCAGATGGGGTTCTTTTCAGCAATGGCCCTGGAGATCCGTCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATTATCGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGAGGTAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCTGCAACACTGCCAGAAGGAGTCGAGGTTACTCATATCAATCTTAATGATGGAAGTTGTGCTGGCCTTGCTTTCCCTGCTCAACAACTTATGTCTCTTCAATACCACCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACGCTTTTAGGGAGTTTATAGAGCTATGA 1248 0.4327 MATKALSFALSLNDLTNRFSSNTPHSAAKVSVFTVRCSSGSGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESIQCFLAGLVIRSLSISTSNWRCAKALGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKMDEELLQMSKSWDIVGKDLISGVSCKTPHEWVDKTKQQWEFSSSRVPGETFHVVAFDFGIKHNILRRLASYGCKITVVPCTWSASETLKMKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRTGHVEISAQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAQQLMSLQYHPEASPGPHDSDYAFREFIEL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01634 415 Gene3D - 49 197 IPR036480 -
Pumo10g01634 415 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Pumo10g01634 415 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Pumo10g01634 415 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Pumo10g01634 415 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Pumo10g01634 415 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Pumo10g01634 415 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 53 177 IPR002474 -
Pumo10g01634 415 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 50 194 IPR036480 -
Pumo10g01634 415 FunFam Carbamoyl-phosphate synthase small chain 48 197 - -
Pumo10g01634 415 Hamap Carbamoyl-phosphate synthase small chain [carA]. 49 415 IPR006274 GO:0004088|GO:0006207|GO:0006541
Pumo10g01634 415 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Pumo10g01634 415 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Pumo10g01634 415 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Pumo10g01634 415 Pfam Glutamine amidotransferase class-I 240 414 IPR017926 -
Pumo10g01634 415 SUPERFAMILY Class I glutamine amidotransferase-like 225 414 IPR029062 -
Pumo10g01634 415 PRINTS Anthranilate synthase component II signature 391 404 - -
Pumo10g01634 415 PRINTS Anthranilate synthase component II signature 306 317 - -
Pumo10g01634 415 PRINTS Anthranilate synthase component II signature 279 288 - -
Pumo10g01634 415 SMART CPSase_sm_chain_2 49 179 IPR002474 -
Pumo10g01634 415 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 198 415 - -
Pumo10g01634 415 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 51 414 IPR006274 GO:0004088|GO:0006207|GO:0006541
Pumo10g01634 415 Gene3D - 198 415 IPR029062 -
Pumo10g01634 415 CDD GATase1_CPSase 237 413 IPR035686 -
Pumo10g01634 415 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 47 403 - -
Pumo10g01634 415 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01634 Pumo-Chr10 21521347 21524637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01634 K01956 - gmx:100788470 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01634 10 21521347 21524637 Pumo10g01634 10 21521347 21524637 ECH