Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01614 ATGGTTATGGCTATGGAGAAAGCGGGGAATTTAGACGCGGCCATAGAGCAATTGCTGAATGCAGAGAAGCATGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACCGAAATTTTACGGCTATGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAGCGACGTGGCCAGCTTAAGCAGGCTGTGACAGCGATGGTACAGCAGGCTATGCAATATATTGATGAGACACCGGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGAAAGATATATGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGAACAAGGACTAATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTATGCGAGTGTTTGACGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATACCATCTCTACTGGAGTTGAAGAGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAATGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAGCAGTTGGTAACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAAGATGAGTTTGAGAATGAGAATAACTTGGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTCTTGTTATATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGGTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCCAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGACTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA 1338 0.4185 MVMAMEKAGNLDAAIEQLLNAEKHARLAGDVAATRNAVTEILRLCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISMRVFDADVSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENENNLGKNLGEKAAEDLRERVIEHNILVISKYYARITLKRLAELLCLSVQEGEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01614 445 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 335 421 IPR000717 -
Pumo10g01614 445 FunFam 26S proteasome non-ATPase regulatory subunit 12 331 410 - -
Pumo10g01614 445 ProSiteProfiles PCI domain profile. 236 406 IPR000717 -
Pumo10g01614 445 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 6 439 IPR040134 -
Pumo10g01614 445 Pfam PCI domain 294 402 IPR000717 -
Pumo10g01614 445 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 408 440 IPR040896 -
Pumo10g01614 445 SUPERFAMILY "Winged helix" DNA-binding domain 334 411 IPR036390 -
Pumo10g01614 445 Gene3D - 333 410 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01614 Pumo-Chr10 21233606 21237925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01614 K03035 - gmx:100793755 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01614 10 21233606 21237925 Pumo10g01614 10 21233606 21237925 ECH