Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01605 ATGGCTTCAATTTCAATCACGACCTTCTCCGTCTACTCGCAATCTCAATCGAAGTCCCTCAATCTACTTCACACCCGCAACAACAGACGCACATCAATTTCGTTTCAGCCAGCCACCCTTTTCTCAGCACTCACTTGTTCCCACACCCCTTCCACACCCTCCTCAAATTTCCCACCGGGAAGGGCTCTAACCAAGTTCCTCTCGGAAAAGGTAGCATTTTTTCTCATTGGGTCGTTTCTCTTATCGGGTTGCTTCAGCAAAAGACCTGCTTTTGCAGAAGCAACGCCTTCCGTGGGTTCCGGCGCAGTGTTGGAGGAGAAGATGAAGCCCTCTGAAGAGAAAAGCGAGCAAGAGGTGGAGGAAATGTGGGAGGAAGTTTTGGAGAAGGATCCGAAAAATGTTGAGGCTCTGAAGGTGGTTTTGTATGGGAAGATTAGGAGAGGGAACTCCAAGGAGGCTGTGAAGTTTGTGGAGGATTTGATTGCTGCGGAGCCGAACGAGGTTGAGTGGAGGCTTTTGCTTGCACTTTGTTATGAGACTATGGGGCACTTGAGTAAGGCTAAAAGATTGTTCAGGGAAATCTTGAAGAAAAGGCCTCTTCTAGTCAGAGCTTTGCATGGTTTGGCTATGGCAATGCACAAAAACCATGAAGGTCCTGCTGTATTTGAAATGCTAAATAATGCTCAAGAGTTAGCTTCTCGTGAAAACAGAGTTACTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGTTGTACAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAACTGATTGATGAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAGGGAATAATATACAGTCTCCTGGGTAAAAATGAGGAAGCTGCACAGCAGTTTGAAACATATCAAACTCTTGTGCCTGAAGAATTTCCTCAGAGAGGATTTCTTGATGATGTTGCCATAGCAGCAAAAAGAACATCCCTGGAACAGTTTAAGAAGGAATTTAGAGATCAATTTTCTTTCCGGAAATAG 1032 0.4409 MASISITTFSVYSQSQSKSLNLLHTRNNRRTSISFQPATLFSALTCSHTPSTPSSNFPPGRALTKFLSEKVAFFLIGSFLLSGCFSKRPAFAEATPSVGSGAVLEEKMKPSEEKSEQEVEEMWEEVLEKDPKNVEALKVVLYGKIRRGNSKEAVKFVEDLIAAEPNEVEWRLLLALCYETMGHLSKAKRLFREILKKRPLLVRALHGLAMAMHKNHEGPAVFEMLNNAQELASRENRVTEERNIRILIAQMHVVQGNLEEGLKRFQELIDENPRDFRPYICQGIIYSLLGKNEEAAQQFETYQTLVPEEFPQRGFLDDVAIAAKRTSLEQFKKEFRDQFSFRK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01605 343 Pfam Tetratricopeptide repeat 250 307 - -
Pumo10g01605 343 SUPERFAMILY TPR-like 117 308 IPR011990 GO:0005515
Pumo10g01605 343 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
Pumo10g01605 343 Pfam Tetratricopeptide repeat 146 205 - -
Pumo10g01605 343 PANTHER TRANSMEMBRANE PROTEIN 187 312 - -
Pumo10g01605 343 Gene3D Tetratricopeptide repeat domain 104 322 IPR011990 GO:0005515
Pumo10g01605 343 SMART tpr_5 168 201 IPR019734 GO:0005515
Pumo10g01605 343 SMART tpr_5 242 275 IPR019734 GO:0005515
Pumo10g01605 343 SMART tpr_5 276 309 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01605 Pumo-Chr10 21075979 21079958 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01605 - - gmx:100795327 580.482