Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01585 ATGGATGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGATATTGAACGGGGAGGACGGTAAGAAAAATTTGCCAAAAACTCGGCTTCTTTCTTGCTTCGACGATTTGGGTCAGCAGTCGGTGGAGCGAACCCTTGAGTACGTGTTTGGCCTCTCAAACAGATCACTCAATTCATTGACTGGTCCGGTTGATCGTGATTTGATTCGTTCTGTCATTAGGAATGATTTCTCAAGATATAATGTGAAATTGAGTGATTCTCATGGTGAAAGAGATGGGATTTGTATTAATGGTAAAATTGGCAATGGGCCTGTTGTTATAGGCCTAGAAGAATCCAGCATCTGCGGTGATATTAAAGTCATCAAGTCACCCTTTCTTATAGAGAGCATGGCGATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTGGAAACATCTGGCATACAACAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGCGATGCTGATGATTCATATGCTTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGTCAGTCATGGGTTGTTGGTGATATCATTGGATGTTGTATAGATTTAGATCGAGATGAAATATTATTCTACAGGAATGGTAATTCCCTTGGGGTGGCATTCCAAGGAATTCGAAAATTGGGTCCTGGTTTTGGTTATTATCCAGCAGTTTCTCTCTCCCAGGGTGAAAGATGTGAGTTGAACTTTGGAGCTCGACCCTTTAAGTATCCAATTGAAGGCTACCTTCCTCTTCAGGCTCCTCCCTTTAAGAGCTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAAGAGGTTTGTTTCATTGGAAGAAATTTTCCATCCTGCTTCTTATGCCATATGTGAGGAATTATTCTCTATACTTGAAGCAGATGTTGGGATCACAGAGTATATGGTTTGGGGTCCACTGTTAACTTTCATGTTTGAAGTTTTTGGTTTGCATGCACCCCATGATTACTCAAGCTTGGATAAAGTAGTTGAGGTTCTGCTACAATTTCAAGGATCACATGTACTATTTGAACACATCCTAAATTCCCTTTCCTGTGGTTGTAAAATAGCCTCATTAGTTCTAACTGAGTGTCCTTACTCTGGATCTTATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCAGATTTTGAATTCTTGTTTGAAGGTTTTCTGTCACAAAAGACTCCAAACAAACAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTAGTGATACAATTTATACCACCTACGAATCCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTACAAAGCCTTCTACTGAAAAACAGAGGAGCAGAACGAAATATTCCACCTCCTGGAGTTTCTAGCAACTCAGTTCTTGTTTCCATTTACACAGTTGTACTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGACATCTGTGGCTGGTTAAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTGAACAAAGTTTTCCTGTACATTTATTTCTGAAAAATGATCCCCATAGAGCTGATATTTCCAGGCTTGGGGGATCCTATAACCATTTATCAAAGCTACACCCAACAATTGATCATGATATGGAAGTGATTCGATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGGATCACTCATTCAACCAGGCAGAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCAGCTAAATACCTGGCCAAGGGTTCTCGTGGTCATTGTAGCTCTATTCCAGAAAGATCTGCTCATGTTGCCGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAACCGATAAACCTAGCTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATACTAATATGCCTACAGCTACGCTACGAGAAGAAGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGGTTCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGCAGTGAGCAATTGAAGCATTTGAAAGAAGCTCGTAATGAATATAGAGGAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCAGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCCTTTGTTCCGTCCACAATTTTCATCAAGCAAGGACTTGCTTCATTTGTCACCTTTGTAGTTACCCATTTCAACGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAGTATTTGGCTACCTTTGAGAGCAATGAGGCAGCCACCCAAAGAATGCCGAAGGCTTTATTATCAGCATTTGATAACAGATCTTGGATTCCAGTGACGAACATACTCCTACGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCGTCATCAGTTCTTTTCCAAAGGTTGCTAAGAGAAGCTTGCATAAGTGATGAAGGATTGTTTTCATCTTTCCTAAACCGTCTGTTCAATACACTCAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCGTGTAATCTTACAAGGATTCTAGAGTTCTGCACTCATGAGATTCCTCAAGCATTTCTGTCTGGACCAGACACAAACCTACGAAGGTTAACCGAGTTGGTTGTATTTATCTTAAATCACATTACTTCTGCAGCCGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAGCCAACCTACAGAAAAAGTAAACCGAGGCATGATATTGGCACCTCTAGTAGGGATCATCTTAAATTTATTGGATGCTACAAATTCAGCAGAATATCGAGAAAACAATGATCTTTTAGATGTTTTTGCAAGCATGGACTGTCCAGATACTGTTCAGTATGGATTCCAGTATCTTTTGGATTATAACTGGGATGGATCTTTTCGGGGGGAAGCTCATGTGGCAAAATATGAGCAGCTAGAGAATTTTCTAAGTCTCCTTACTTGCCGCACTGTGTTACCACATGATAAAGTGGATAGTGTGGGAGATACAACAGATCTTGATGATGGCTTGTGCTGCATATGTTATGCATGTGAAGCAGATGCTCAAATTGCACCTTGTTCACACAGGTCTTGTTATGGCTGCATAACCAGGCACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACGCAACAGTGACAGATGTTAGCAAAATTGGTTAG 3813 0.4152 MDEDSPRVGGFSAGLAVILNGEDGKKNLPKTRLLSCFDDLGQQSVERTLEYVFGLSNRSLNSLTGPVDRDLIRSVIRNDFSRYNVKLSDSHGERDGICINGKIGNGPVVIGLEESSICGDIKVIKSPFLIESMAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKLGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPFKSYFVTQLLQCWSRLLDMHSVERAEHSLVQKLRRVKRFVSLEEIFHPASYAICEELFSILEADVGITEYMVWGPLLTFMFEVFGLHAPHDYSSLDKVVEVLLQFQGSHVLFEHILNSLSCGCKIASLVLTECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSCEDASYEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLQSLLLKNRGAERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGEQSFPVHLFLKNDPHRADISRLGGSYNHLSKLHPTIDHDMEVIRWDEGCMDSEETRITHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERSAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNMPTATLREEELLDALLWLYHVGLAPNFKQGSYYMTHQAQSISLLEETDKQIRERACSEQLKHLKEARNEYRGEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACISDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLTRILEFCTHEIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHSQPTEKVNRGMILAPLVGIILNLLDATNSAEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAHVAKYEQLENFLSLLTCRTVLPHDKVDSVGDTTDLDDGLCCICYACEADAQIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSKIG 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01585 1270 FunFam E3 ubiquitin-protein ligase RNF123 1213 1270 - -
Pumo10g01585 1270 FunFam E3 ubiquitin-protein ligase RKP 119 293 - -
Pumo10g01585 1270 ProSiteProfiles Zinc finger RING-type profile. 1222 1256 IPR001841 -
Pumo10g01585 1270 SUPERFAMILY Concanavalin A-like lectins/glucanases 131 282 IPR013320 -
Pumo10g01585 1270 SMART SPRY_3 147 269 IPR003877 GO:0005515
Pumo10g01585 1270 Gene3D - 122 294 IPR043136 -
Pumo10g01585 1270 MobiDBLite consensus disorder prediction 712 727 - -
Pumo10g01585 1270 CDD RING-HC_RNF123 1220 1263 - -
Pumo10g01585 1270 ProSiteProfiles B30.2/SPRY domain profile. 77 270 IPR001870 -
Pumo10g01585 1270 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 32 1268 IPR045129 GO:0004842
Pumo10g01585 1270 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 138 IPR045737 -
Pumo10g01585 1270 MobiDBLite consensus disorder prediction 705 732 - -
Pumo10g01585 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1215 1269 IPR013083 -
Pumo10g01585 1270 CDD SPRY_RNF123 138 266 IPR035773 -
Pumo10g01585 1270 Pfam Ubiquitin elongating factor core 763 958 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pumo10g01585 1270 Pfam SPRY domain 149 267 IPR003877 GO:0005515
Pumo10g01585 1270 SUPERFAMILY RING/U-box 1214 1265 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01585 K12169 - gmx:100800617 2479.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01585 10 20917012 20926896 Pumo10g01585 10 20917012 20926896 ECH