Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01560 ATGTGGCAAATCGAGTCCAATGCTTGTCTTCCTGACTCAGTCTCACACTTGTGTTTTAGATTTGTCTCAAGTGACAGTTCTGTTCATTCGATTAGATTGCAAAAATTCGTGTACTTTCCAAATTCCATCACTTTGAAGAATAGTGTGTTAAGTATTAGGCATAAGAAGCTGCAACTCATGGCGAAGCACAAACTTCGCAACACTTTTTTGCTGCATTTGGTGATTTTCTTCTTCTGTGCTACATCGGTTTCAGCGAGAGTTGCGCCTCTCTTGCAGAGCTATGGGAACCCCATTTTCAGATCAAACTTTCATACTATTTACGACACTTCGAAGTATGGTGTGTTTCAACTGAGTAATGGGTTGGCTAAAACGCCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAAACGGTCATTAAGGAAACGGCGGATGCACTGGAATCAACGGGGTTGGCTGATTTAGGTTATGTGTATGTCAACATAGATGATTGCTGGTCTGCTGTGACAAGAAATCTGAAGAGTCAACTGGTTCCTGATCCTAAGACATTTCCATCTGGAATCAAAGCTCTAGCAGATTATGTACATGGAAAGGGACTCAAGCTTGGCATATATTCCGATGCTGGGGTTTTTACATGTCAAGTCCGGCCAGGATCGATTTTCCATGAAACTGGTGATGCAGATTTATTTGCCTCTTGGGGTGTAGATTATTTGAAATATGACAATTGTTACAATCTGGGAATCCCTCCAAAAAAACGTACAATAAATTTAGTCAACAATGTGGTTGCTTTTGTTCCAGATATCCCACCTATGCGTGATGCTCTCAATGCGACTGGGCATAAGATTTTCTATTCACTCTGTGAATGGGGTCTTGGTGACCCTGCTTTGTGGGCAGACAAGGTTGGTAACAGTTGGCGCACAACCGAAGACATCAATGATTCATGGGCAAGCATGACAACCATTGCCGATCTTAATGATAAATGGGCTGCATATGCTGGGCCTGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAACGGTGGCATGACTTACCAGGAATACCGTGCTCACTTCAGCATCTGGGCTTTAGCAAAGGCTCCTCTATTGATTGGCTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTGAGCAATAAAGAAGTCATTGCCATCAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGTTTCTGGAATAGATGGTTGCAGACAGGTTTGGGCAGGTCCTTTGTCAGGAAACCGATTGGTTGTTGCTCTTTGGAATCGTTGCTCAAAAGTAGCTACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGGGTTCATGTTTCTGTGAGGGATTTGTGGCAGCACAAGGTAGTAACTGGAGATGCAGTGTCATCATTCAGTGCTCGAGTTGATATCCACGATTGTGAACTGCACATTTTCACTCCATTTACAGTATCTCACTCTGTAGAGTAG 1512 0.4306 MWQIESNACLPDSVSHLCFRFVSSDSSVHSIRLQKFVYFPNSITLKNSVLSIRHKKLQLMAKHKLRNTFLLHLVIFFFCATSVSARVAPLLQSYGNPIFRSNFHTIYDTSKYGVFQLSNGLAKTPQMGWNSWNFFACNINETVIKETADALESTGLADLGYVYVNIDDCWSAVTRNLKSQLVPDPKTFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSIFHETGDADLFASWGVDYLKYDNCYNLGIPPKKRTINLVNNVVAFVPDIPPMRDALNATGHKIFYSLCEWGLGDPALWADKVGNSWRTTEDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTAETLEILSNKEVIAINQDSLGVQGRKVQVSGIDGCRQVWAGPLSGNRLVVALWNRCSKVATITASWEALGLESGVHVSVRDLWQHKVVTGDAVSSFSARVDIHDCELHIFTPFTVSHSVE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01560 503 Gene3D Aldolase class I 117 403 IPR013785 -
Pumo10g01560 503 FunFam Alpha-galactosidase 404 496 - -
Pumo10g01560 503 FunFam Alpha-galactosidase 117 403 - -
Pumo10g01560 503 Pfam Alpha galactosidase A 124 401 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 73 495 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 Pfam Alpha galactosidase C-terminal beta sandwich domain 417 489 IPR041233 -
Pumo10g01560 503 Gene3D - 404 495 IPR013780 -
Pumo10g01560 503 ProSitePatterns Alpha-galactosidase signature. 160 176 IPR000111 GO:0004553|GO:0005975
Pumo10g01560 503 SUPERFAMILY Glycosyl hydrolase domain 396 493 - -
Pumo10g01560 503 SUPERFAMILY (Trans)glycosidases 117 401 IPR017853 -
Pumo10g01560 503 CDD GH27 125 401 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 230 247 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 271 289 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 336 355 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 119 138 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 155 170 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 196 217 IPR002241 GO:0004553|GO:0005975
Pumo10g01560 503 PRINTS Glycosyl hydrolase family 27 signature 357 378 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01560 Pumo-Chr10 20618848 20625528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01560 59 501 Glycoside Hydrolase AT3G56310 67.261 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01560 K07407 - gmx:100784072 819.69