Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01555 ATGCTCCACAACAAGTCCTTCGTTAAGAAAACCAAAGGTGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCGGTGCTCGCCTCAGTGCTTCTCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCGATTGATGATGTCGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGGCTGTTTACAACCGCATAAGAGCTATCTGTAGCAATTCCGTGAGGAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGGGAAACCAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAAGGAGAACAAGAGGAAGGCTAGTGAAGAGGGCATTTTGGCCGAAACAGTTGAGTCATACGTGAAGTCTTTGGACCGACCTGATTTACTTGACCTGCTTGTGCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTATTCTGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGAAGTGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAACATGAACCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAGGACCAGTGGCAAGGAGACTCGTCTCTATCTATAGCCCGTGAAGTGCTGATGACTGCACCTAGAACTATTCCTCAGCAGGGTTCTTCTGAACAAGTAAATGCTGTACCCAGTCGTCCTTGTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCGCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAACCGAGGTGGTTTTGATAGAAAATGATATAAATACACGGCCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGTAGATTTGTCTAATCCAATCAGGAAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCATCCTGGCACTCCCCTTGATGATGAGGCAGCACAAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACAGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCAGACATTATTTCCACCAGATACACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTACATTGAAGCACAAGCAAGGATGGATGATAGTCGATTGATGGATCCAATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGACACAGAGACTCATGACCCCCTTGATATTGGAATGTACCAGATCCGGGAGGCGAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTATGCTCATTATTAAGGCGTCATCCAACACCAACTAGAGAGATGCTTGAACCCTTGCTACGGACTTCTACTGCAGTTGGCTTGCACTTGGATGTCTCATCATCAAAAGCGTTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTGCAGTGGTGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTCGCTGCTTCTTTAGAAATATCCAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGTCACAGGAATGCCCAGTATGCAGGGCGGGCATCTGTAGAGCTACACACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGGTTTTTTGTGTTTGTACCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCTGAAAAGGGAAGTGGAGATTGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGACGGTAGCCTTTCATACGGCGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAACCTCAGCCTAATCGGCCAAAACTTCAGCTTACCCTTATGTAG 2763 0.4376 MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSGARLSASPSTILVVDTNVVLNQIDLLENPAIDDVVVLSIVLEEVKNKNMAVYNRIRAICSNSVRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDRPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQGDSSLSIAREVLMTAPRTIPQQGSSEQVNAVPSRPCGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTETEVVLIENDINTRPFSSQVLACLPPLPWVVSSVDLSNPIRKDLRHLRVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYIEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTSTAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLEISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGDWYVDEQQQKIKKMDGSLSYGVLQTVQIHMEVVEPQPNRPKLQLTLM 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01555 920 Gene3D - 337 412 - -
Pumo10g01555 920 Gene3D - 9 192 - -
Pumo10g01555 920 FunFam Exosome complex exonuclease RRP44 9 192 - -
Pumo10g01555 920 Gene3D - 207 311 - -
Pumo10g01555 920 PANTHER RIBONUCLEASE 21 914 - -
Pumo10g01555 920 Pfam Rrp44-like cold shock domain 219 300 IPR033771 -
Pumo10g01555 920 Pfam Dis3-like cold-shock domain 2 (CSD2) 359 426 IPR041505 -
Pumo10g01555 920 SUPERFAMILY Nucleic acid-binding proteins 215 409 IPR012340 -
Pumo10g01555 920 Pfam RNB domain 457 786 IPR001900 GO:0003723|GO:0004540
Pumo10g01555 920 FunFam Exosome complex exonuclease RRP44 homolog A 837 920 - -
Pumo10g01555 920 SUPERFAMILY Nucleic acid-binding proteins 415 833 IPR012340 -
Pumo10g01555 920 SMART PIN_9 52 165 IPR002716 -
Pumo10g01555 920 SMART RNB_2 457 788 IPR001900 GO:0003723|GO:0004540
Pumo10g01555 920 Pfam S1 domain 838 906 IPR033770 -
Pumo10g01555 920 SUPERFAMILY Nucleic acid-binding proteins 837 916 IPR012340 -
Pumo10g01555 920 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Pumo10g01555 920 FunFam Exosome complex exonuclease RRP44 homolog A 337 412 - -
Pumo10g01555 920 Pfam PIN domain 54 177 IPR002716 -
Pumo10g01555 920 ProSitePatterns Ribonuclease II family signature. 755 779 IPR022966 -
Pumo10g01555 920 CDD PIN_Rrp44-like 9 180 - -
Pumo10g01555 920 Gene3D - 837 920 IPR012340 -
Pumo10g01555 920 FunFam Exosome complex exonuclease RRP44 homolog A 205 303 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01555 K12585 - gmx:100806652 1752.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01555 10 20553060 20569992 Pumo10g01555 10 20553060 20569992 ECH