Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01423 ATGGAAAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCTTGGCCAGGACCAGGCCGCGCTATAACCACCACTACAGCACCGGCGGGAACCACCGCCATCGCGGCGGCGGCGCCGCGCGCCACGCGAAGACGCAGCAGGACTCGCCGTTGACGGTCACCACCAGCTACCGCATTCTCTGCCATGACATGAAGGCCGGCGGCGTGATTGGCAAGTCCGGCAGCATTATAAAGTCGATACGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTCATGCCGGGGGACGAGGAGCGGATCATTGAGATTTCCGACACGCGCCGTCGCGACCCCGAGGGGAGAATGCCGTCGTTCTCGCCGGCGCAGGAGGCGCTGCTGCTGATCCACGAGCGGATTCTCGAGAGCGACGCCGCGTTCGGGGTGGCGGAGGAGGACGAGGAGTACGGCGGCGTCGGCGGCGGTGGAAGGGGCGGCGGCGGCGGAGGGAGGGACCGCGTGGCGACGAGGCTGGTGGTGTCGCGAATGCATGTGGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACGCAAATTAGGATACTCCCTAGAGATCACAACCTTCCTCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTTGTAGGTGATCTAAATGCTGTAAAGAATGCTCTAGTAATTATATCATCACGGTTGAGGGAGAGCCAACACCGTGACCGCAGTCATTTCCATGGACGTGTACATTCACCAGAGCGTTTTTTCTCTCCTGACGATGATTATATTCCTCACGTGAGTAGTGGATCTCGTAGATCGTCTGTGGATGGGGCCGCTTTTGGAACACGAGGATCTAACACAAATAGCAGAAATAATAACCACCCCTCATTAAGCTATGCAATGGAGCCTGGGGCTGCCCCTATTGCTGATGATGCACAGGGCTTCTATGGGGAGGAGCTTGTTTTCCGTATACTTTGTCCAGTTGAGAAAGTTGATCATATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAGAATGAAGTTGGCGTAGATGTTAAGGTCACTGATCCTGTTGGTGGTTCGGATGAACAGATAATTATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTACATATACAAACTCGCATTGTCGATCTTGTGCTAGATAAGGACAATACTATAACCACCAGGCTTGTTGTCCCATCTAGCGATATCGAATGCTTAGATGGAAAAGATATTTCTCTTTCGGAAATAAGGAGGTTGACTGGTGCTAATATTCAAATTTTGCCTAGAGATGAGCTACCTCTTTGTCTTGCAAAAACTGATGAACTGGTACAGATTGTAGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGGAGTTACATGTACAGGGATTTCTTTCAAAGGGACACAGTACCACTTCCAGCTCCCTTAACTGGTGTGGAGGCATCTTCTTCCAATAATATAGTTCCGATTACTGAAACTCCCACAACCTATCAAAATGTGCAAGCTGTTGCAGCAGCCCTTCTGTCAAAGGAAACTGGAGGATCTAGCACTGAGGCAGGAAAGCAGAAAGAAAGTGACCGCCGCGATGATGTGCTTAGTGGTTTAAATAGGATTGCTGTGCCTCTTGTTACGAGGAGTACACTTGAAGTTGTTTTACCAGAGTATGCAGTACCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTGCCCAAATAAGTGAGTTATCAGGAGCCAATGTAACCCTTGTAGAGGATAGACCAGACGTGACACAGAAGATTATTCAGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGACGGCCCTTAA 1959 0.4977 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYSTGGNHRHRGGGAARHAKTQQDSPLTVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVAEEDEEYGGVGGGGRGGGGGGRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDLNAVKNALVIISSRLRESQHRDRSHFHGRVHSPERFFSPDDDYIPHVSSGSRRSSVDGAAFGTRGSNTNSRNNNHPSLSYAMEPGAAPIADDAQGFYGEELVFRILCPVEKVDHIIGESDGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEALLHIQTRIVDLVLDKDNTITTRLVVPSSDIECLDGKDISLSEIRRLTGANIQILPRDELPLCLAKTDELVQIVGEIKAARDAVVEVTSRLRSYMYRDFFQRDTVPLPAPLTGVEASSSNNIVPITETPTTYQNVQAVAAALLSKETGGSSTEAGKQKESDRRDDVLSGLNRIAVPLVTRSTLEVVLPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01423 652 ProSiteProfiles Type-1 KH domain profile. 172 242 - -
Pumo10g01423 652 SMART kh_6 575 645 IPR004087 GO:0003676
Pumo10g01423 652 SMART kh_6 59 140 IPR004087 GO:0003676
Pumo10g01423 652 SMART kh_6 171 247 IPR004087 GO:0003676
Pumo10g01423 652 SMART kh_6 330 403 IPR004087 GO:0003676
Pumo10g01423 652 SMART kh_6 414 488 IPR004087 GO:0003676
Pumo10g01423 652 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 496 IPR036612 GO:0003723
Pumo10g01423 652 Gene3D K Homology domain, type 1 57 171 IPR036612 GO:0003723
Pumo10g01423 652 MobiDBLite consensus disorder prediction 279 306 - -
Pumo10g01423 652 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 253 IPR036612 GO:0003723
Pumo10g01423 652 ProSiteProfiles Type-1 KH domain profile. 60 132 - -
Pumo10g01423 652 ProSiteProfiles Type-1 KH domain profile. 576 640 - -
Pumo10g01423 652 Gene3D K Homology domain, type 1 575 647 IPR036612 GO:0003723
Pumo10g01423 652 Pfam KH domain 578 641 IPR004088 GO:0003723
Pumo10g01423 652 Pfam KH domain 175 243 IPR004088 GO:0003723
Pumo10g01423 652 Pfam KH domain 63 111 IPR004088 GO:0003723
Pumo10g01423 652 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 59 111 IPR036612 GO:0003723
Pumo10g01423 652 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 569 646 IPR036612 GO:0003723
Pumo10g01423 652 CDD KH-I_PEPPER_rpt2_like 175 247 - -
Pumo10g01423 652 ProSiteProfiles Type-1 KH domain profile. 331 398 - -
Pumo10g01423 652 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 325 389 IPR036612 GO:0003723
Pumo10g01423 652 Gene3D K Homology domain, type 1 172 251 IPR036612 GO:0003723
Pumo10g01423 652 CDD KH-I_PEPPER_rpt1_like 331 399 - -
Pumo10g01423 652 MobiDBLite consensus disorder prediction 33 57 - -
Pumo10g01423 652 CDD KH-I_PEPPER_rpt1_like 60 133 - -
Pumo10g01423 652 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 53 451 - -
Pumo10g01423 652 MobiDBLite consensus disorder prediction 278 306 - -
Pumo10g01423 652 Gene3D - 330 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01423 Pumo-Chr10 18973705 18979011 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01423 K21444 - gmx:100804167 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01423 10 18973705 18979011 Pumo10g01423 10 18973705 18979011 ECH