Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01420 ATGAAAGGTTCATGTCTTCTTCCCTCGCCCTCTTTCACCGGAATCAGGACAAGCAAAGAGCTTCCGCATATGCTGTCACTGTGTGAGTTGAAAAGCATAACATGCTTCTCAGTTTGTAATCAAAAGCAAAAATACAATCAAAAGCTTTACATTATTCCCATTAGGACTGTTTGTGTTCGGTTCTGCATCTCAAGATCCTCTGTTGGGTCAGTGGAATTCGGTGGGACAGGCCCACACAGTGATGCTTATTCAGGATTTTCAGCTCCAAATGACTATCAGAGAATCGGCAGTTTAGAGAGAGAGTTGGAAGAATTATTTGATGAAGTGAAAAGAATGATTAGGATGGGAAACAAAAATGATGCTATAGACCTGCTAACTGCAAATTATGAAGTGGTGAAAGAGCGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAACTTTGGACATCATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTCTGTTGAATATGATGAAAGAAGTTGTTGACAATTTGAAGGATGATGCACCTCGTCTAGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAGCAAATTTGAAAAATCATTGGACACGTATCAGAGGGCTGTCTACATTATAGAGAGGACCTATGGTAAGGATAGCACTTTTCTTGTCACACCCTGTTTGGGCATGGCAAAAGTTCTTGGCTTTATTGGAAAAGCAACAAAAGCAATACAGACATACCAGCGTGTGATCAGTCTTTTGGAATCGAGTAGAGGTACCAAAAGTAAGGATTTGGTTGTACCTTTACTTAGTCTTGCCAATCTTTTACTCAAAGAAGGGAGAGCCAATGATGCTGAAACTCATTTTACTAGAGTTCTCAACATATACACCGAATTATATGGACAAAATGATGGAAGAATTGGAATGGCTATGAGTTCCCTAGCCCGAGTTAAGTGTGCTCAAGGGAAATCAGATGAAGCAATTCAATTGTTTAAACGTGCTCTTCAGGTCATGAAGGATTCAAATTACTTGTCACCAGATGACAGTATAATGGAAAAGATGAGGGTAGATCTAGCTGAATTACTTCATACTGTTGGGAGAGGACAGGAAGGCAGAGAGCTATTAGAGGAGTGCTTGTGGATCACTGAGAGGAACAAGGGAAAGGAGCACCCCAGCCTAGTGACACACATGATAAATCTTGCAACTTCATATTCACGGTCAAAGAATTATGCGGATGCCGAGCACTTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCATAAGGGAGCTGATGACCAGTCCATCAGCTTTCCTATGTTACACCTTGCAGTTACACTCTACCATTTGAAAAAAGATGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTGCGCATCCGTGAGAAGGCCTTTGGAAAAAATTCTCTTCCTTCTGGGGAGGCTTTGGACTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGAAAGTGAGTTACTCGAGCTGCTTAGAAGGATCCTGAATATTCAAGAGAGAGAATTTGGATATGAGAGTGAGGAGGTTTTGGTTACCTTAAAAAAAATTGTATACTACTTGGATAAACTAGGGAAAAAAGATGAAAAGCTTACCCTTCAGAGAAGGTTGTCTGTGCTTAGTAAGAAGTATAAGCAGATGGTTAATTACTAA 1698 0.4034 MKGSCLLPSPSFTGIRTSKELPHMLSLCELKSITCFSVCNQKQKYNQKLYIIPIRTVCVRFCISRSSVGSVEFGGTGPHSDAYSGFSAPNDYQRIGSLERELEELFDEVKRMIRMGNKNDAIDLLTANYEVVKERLNAGTKGIEEAATLDIIALGYMAVGDLKFVGSLLNMMKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDTYQRAVYIIERTYGKDSTFLVTPCLGMAKVLGFIGKATKAIQTYQRVISLLESSRGTKSKDLVVPLLSLANLLLKEGRANDAETHFTRVLNIYTELYGQNDGRIGMAMSSLARVKCAQGKSDEAIQLFKRALQVMKDSNYLSPDDSIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERNKGKEHPSLVTHMINLATSYSRSKNYADAEHLLRRSLQIMIKHKGADDQSISFPMLHLAVTLYHLKKDEEAEKLALEVLRIREKAFGKNSLPSGEALDCLVSIQTRLGKDESELLELLRRILNIQEREFGYESEEVLVTLKKIVYYLDKLGKKDEKLTLQRRLSVLSKKYKQMVNY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01420 565 Coils Coil 95 115 - -
Pumo10g01420 565 Gene3D Tetratricopeptide repeat domain 92 359 IPR011990 GO:0005515
Pumo10g01420 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 112 548 - -
Pumo10g01420 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Pumo10g01420 565 SMART tpr_5 187 220 IPR019734 GO:0005515
Pumo10g01420 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Pumo10g01420 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Pumo10g01420 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Pumo10g01420 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Pumo10g01420 565 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Pumo10g01420 565 Pfam MalT-like TPR region 188 469 IPR041617 -
Pumo10g01420 565 SUPERFAMILY TPR-like 394 496 IPR011990 GO:0005515
Pumo10g01420 565 Gene3D Tetratricopeptide repeat domain 360 564 IPR011990 GO:0005515
Pumo10g01420 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Pumo10g01420 565 SUPERFAMILY TPR-like 188 428 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01420 - - gmx:100805230 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01420 10 18945833 18950513 Pumo10g01420 10 18945833 18950513 ECH