Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01412 ATGGAGTCTCTGGAACTCGCTCCTCCTCTTCTTCTTCTGCATCCACCTCAAGCTTTCAACAATTCACGATCAATAAGGCAACTCAGTTTCCCTTCTCTGCTTAGAAGAAAAACTAGAAATGCCAACTTGCGATCATTTTCCAGTAACCTTCAAGGTGGTGGCGGCGCTACTTCACAAGACGGACCATTCGCTTTTGAAGACCAAATCTCTCACCACAAAGACGACAGAGCTCTCGTGTTAGCCAGAGAAACCGACGATTTTGGCTATCTCGTTGGCTTTCGCTTGATTCCTGACTCTGGTCTTGAAGAGTTGATGAGTGTGAAACAAGCAATGACTGAGGAAGATTCTAGTATCGATGAGGTTGAAAAACCAGAGGTTGAGGACATAGAGGAAGAGGGAGCTAAGACTAGAGTGTCCCATAACATTGTTTTCGTGACTGCTGAAGCGGCGCCGTATTCAAAGACCGGTGGCCTTGCTGATGTTTGTGGCTCCTTGCCAATAGCACTGGTGGGCCGTGGACACCGTGTGATGGTTGTCACGCCGAGATACATTCATGGTACTTCTGAGGATCTCAAGTTTGCCGGGGCAGTTGATCTTGATCAATGCACCAAAGTGTTTTGCTTTGGAGGTGCTCAAGAAATTGGCTTTTACCATGAGTACAGGGAAGGGGTTGATTGGGTATTTGTGGATCACCCCTCATTCCATAGACCAGGGAATCCGTATGGAGACAAGTATGGAACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAAGCCCCATTGGTGCTTCCATTGGGAGGGTTCACTTATGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAATACTTTTGGCAGCGAAGTATCGTCCACATGGGGTATATAAGGATGCACGTAGTATATTAGTGATACATAATATAGCACATCAGGGAGTGGAACCTGCAATTACATATAGTAATTTGGGGCTACCTCAAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTACGTGGGCAAGGACGCATGCTCTTGACACGGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTTGTTACAGCTGACCGGATTGTTACAGTAAGCAAGGGCTATTCCTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTACATGATTTATTAAGCAGTCGAAAAAGTATTCTCAGTGGGATCACAAATGGAATTGATGTCACTGAATGGGACCCGTCATGTGATAAACATATTGCTTGCAACTATTCTGTTGATGACCTTTCCGGGAAGGCCGAATGCAAGATTTCTTTGCAGAAGGAATTGGGTCTTCCAGTGAGGCCTGATTGTCCATTGATTGGATTCATTGGAAGACTGGACTACCAGAAAGGTATTGACCTGATTCGCTTGGCAATGCCAGAGCTCATGGAAGCTGATGTTCAGTTTGTTATGCTTGGTTCAGGAAACCCTATTTATGAAGACTGGATGAGAGCAACAGAATCAGCTTATAAAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCAATATCCCATAAAATAACAGCAGGCTGTGATATACTGTTAATGCCATCTGCATTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTAGTTCATGAAACTGGGGGGCTAAGAGATACTGTTCATAATTTTAATCCATATACTGAAGAAAGCAAAGCTGAAAGCACTGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGTTAACGGCTCTAAGATATGCCATTCAAACATATAATGAACACAAGTCTTCTTGGGAGGGATTGATGATAAGAGGTATGACAAGAGATTACACATGGGTAAATGCTGCCACTCAATACGAGCAAGTCATTGAGTGGGCTTTCCTCGACCCTCCTTATTGCTGA 1950 0.4436 MESLELAPPLLLLHPPQAFNNSRSIRQLSFPSLLRRKTRNANLRSFSSNLQGGGGATSQDGPFAFEDQISHHKDDRALVLARETDDFGYLVGFRLIPDSGLEELMSVKQAMTEEDSSIDEVEKPEVEDIEEEGAKTRVSHNIVFVTAEAAPYSKTGGLADVCGSLPIALVGRGHRVMVVTPRYIHGTSEDLKFAGAVDLDQCTKVFCFGGAQEIGFYHEYREGVDWVFVDHPSFHRPGNPYGDKYGTFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPILLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPQEWYGALEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGYGLHDLLSSRKSILSGITNGIDVTEWDPSCDKHIACNYSVDDLSGKAECKISLQKELGLPVRPDCPLIGFIGRLDYQKGIDLIRLAMPELMEADVQFVMLGSGNPIYEDWMRATESAYKDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPYTEESKAESTGWTFSPLTKESMLTALRYAIQTYNEHKSSWEGLMIRGMTRDYTWVNAATQYEQVIEWAFLDPPYC 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01412 649 FunFam Starch synthase, chloroplastic/amyloplastic 141 426 - -
Pumo10g01412 649 Pfam Glycosyl transferases group 1 456 607 IPR001296 GO:0016757
Pumo10g01412 649 Pfam Starch synthase catalytic domain 141 399 IPR013534 -
Pumo10g01412 649 Gene3D Glycogen Phosphorylase B; 414 625 - -
Pumo10g01412 649 CDD GT5_Glycogen_synthase_DULL1-like 141 641 - -
Pumo10g01412 649 Gene3D Glycogen Phosphorylase B; 160 638 - -
Pumo10g01412 649 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 106 648 - -
Pumo10g01412 649 MobiDBLite consensus disorder prediction 112 132 - -
Pumo10g01412 649 Hamap Glycogen synthase [glgA]. 140 642 IPR011835 GO:0004373
Pumo10g01412 649 NCBIfam glycogen/starch synthase, ADP-glucose type 141 639 IPR011835 GO:0004373
Pumo10g01412 649 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 111 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01412 Pumo-Chr10 18846560 18859592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01412 141 639 Glycosyltransferase AT3G01180 50.791 5.10e-168 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01412 K00703 - gmx:100807354 1248.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01412 10 18846560 18859592 Pumo10g01412 10 18846560 18859592 ECH