Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01409 ATGCTTGCGTTTCGATCGAAGCCCTGCAGTTACAAGGAAACAGCGACCCTCGCACTTGCCCACTTCAGGCACTTGGTGTTCAACTTCACACGCGCCGGGATTTCTCGGTGCCCCCCACGCGCCGGCTTCGGGGTTCGGAGAGGCTACAACGTCGTTGCCTCGTTGGGGGACCCACCCGAAGTCTGGTCCGGTGGCGGGATTGTCGTTCGCCCGGGGAATTCCAATTTCGAAGTCGCCGGCGGCGGCGCCGCCCCGAACTCCGGCGATTCGAAAGAGGGGTGTTGGGGTGGCTCCAATTTGGGGAACAGTTTCCCAACGCCAAAGGAGATTTGCAAGGGGCTCGACAAATTCGTTATTGGACAAGAGAGGGCAAAGAAGGTGCTTTCTGTGGCGGTTTATAATCACTATAAGAGGATATTTAATGAAACTTCTTCGCCCAAGTGGCCTGCAGGAGATTCAGATAATAATGTGAAGGCTGATGCTGTTGATGATGATAGAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGGCCGACAGGATCAGGGAAGACATTACTTGCCAAAACTTTGGCACGGTTTGTAAATGTTCCCTTTGTTATTGCCGACGCAACATCACTCACTCAGGCAGGTTATGTTGGAGAGGATGTGGAATCCATATTATACAAGCTCCTCATGGTTGCAGATTATAATGTGGCAGCTGCACAGCAAGGCATTGTTTACATTGACGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTTTCTGGTGAAGGTGTTCAGCAGGCATTACTAAAGATGCTTGAGGGCACGGTTGTCAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCCAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATTTGTGGAGGAGCATTTGTTGACTTAGAGAAAACAATCTCAGAAAGGCGTCATGATTCTTCTATTGGATTTGGGGCACCTATACGTGCAAACTTGAGGACTGGTAAAGTCACAGAAGCTGCTGTTGCATCATCGTTATTACAAACTGTTGAAAGTAGTGATCTTATTGCATATGGTTTGATACCTGAATTTGTTGGGCGGTTTCCTATCCTTGTCAGTTTGTCAGCTTTAACAGAAAATCAACTCATTCAGGTCCTCACAGAGCCAAAGAATGCTCTAGGGAAGCAATACAAGAAGATGTTCCAAATGAATGGGGTAAAGTTACATTTTACGGAAAACGCTCTAAGATCAATTGCCAGAAAAGCAATGTCTAAAAATACTGGTGCTCGGGGTTTACGCTCAATATTAGAGAATCTGTTGGTAGATGCCATGTATGAGATTCCTGATATTAGAACAGGCGATGATGTTATAGATGCTGTTGTTGTTGATGAAGAGGCCGTTGGAAGTGAGGAGCGTGGGAGAGGGGCTAAAATCCTTTATGGTAAAGGTGCATTGGATCGTTATCTTTCGGAGCAGAAAAATGACTCAGAGACCATGGAGGCATCAGCTGCAGATAATGAAGCAGATACAGAACTTCCTTCCATTGTTGCCAGCATGTAA 1572 0.4612 MLAFRSKPCSYKETATLALAHFRHLVFNFTRAGISRCPPRAGFGVRRGYNVVASLGDPPEVWSGGGIVVRPGNSNFEVAGGGAAPNSGDSKEGCWGGSNLGNSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNETSSPKWPAGDSDNNVKADAVDDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFGAPIRANLRTGKVTEAAVASSLLQTVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHFTENALRSIARKAMSKNTGARGLRSILENLLVDAMYEIPDIRTGDDVIDAVVVDEEAVGSEERGRGAKILYGKGALDRYLSEQKNDSETMEASAADNEADTELPSIVASM 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01409 523 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 98 379 - -
Pumo10g01409 523 Gene3D - 98 379 IPR027417 -
Pumo10g01409 523 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 380 481 - -
Pumo10g01409 523 Pfam C-terminal, D2-small domain, of ClpB protein 381 450 IPR019489 -
Pumo10g01409 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 467 IPR027417 -
Pumo10g01409 523 SMART AAA_5 170 333 IPR003593 GO:0016887
Pumo10g01409 523 MobiDBLite consensus disorder prediction 496 523 - -
Pumo10g01409 523 SMART ClpB_D2_small_2 381 471 IPR019489 -
Pumo10g01409 523 Gene3D - 380 481 - -
Pumo10g01409 523 Pfam AAA domain (Cdc48 subfamily) 170 374 IPR003959 GO:0005524|GO:0016887
Pumo10g01409 523 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 91 498 - -
Pumo10g01409 523 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 102 472 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Pumo10g01409 523 CDD RecA-like_ClpX 105 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01409 Pumo-Chr10 18819453 18825381 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01409 K03544 - gmx:100779768 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01409 10 18819453 18825381 Pumo10g01409 10 18819453 18825381 ECH