Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01406 ATGGGCTGTTACTGTTCAACTTCAAAGAAAACAGAAGTACCGGGACCGGGTTATGAGGAACCCACCGTTCTAGCATCTGAGACACCATTTACTGTTACTGAAGTAGAGGCCTTGCATGAACTGTACAAGAAGTTGAGCAATTCAATTATTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCACTCTTCAGGAATAAAAACAAGAGCAATCTGTTTGCAGATAGGATTTTTGACTTATTTGATCTGAAGCGCAATGGGGTCATCGAGTTCGGGGAATTTGTTCGATCATTGGGCGTTTTTCACCCAGATGCAGCTTTAGAAGACAAGATTACATTTGCTTTTAGATTGTATGATCTGAGGCAGACAGGGTTTATTGAGCGAGAGGAGTTGAAGGAGATGGTATTGGCACTTCTGCAGGAGTCGGAACTTGTGCTTTCAGATGATATGATTGAAACCATTGTGGATAAGACTTTTAGTGATGCTGATATAAACGGTGATGGAAGGATCGATCAAGAAGAGTGGAAAGCATTTGTGTCCAAACATCCATCCTTGATAAAGAACATGACTCTGCCATATCTGAAGGATATTACCTTGGCATTTCCCAGTTTTGTCGTAAGAACGGATATTGAAGAGTCAGAGATGTGA 651 0.4132 MGCYCSTSKKTEVPGPGYEEPTVLASETPFTVTEVEALHELYKKLSNSIIEDGLIHKEEFQLALFRNKNKSNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPDAALEDKITFAFRLYDLRQTGFIEREELKEMVLALLQESELVLSDDMIETIVDKTFSDADINGDGRIDQEEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTDIEESEM 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01406 216 FunFam calcineurin B-like protein 3 20 213 - -
Pumo10g01406 216 ProSiteProfiles EF-hand calcium-binding domain profile. 107 142 IPR002048 GO:0005509
Pumo10g01406 216 PANTHER CALCINEURIN B 2 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pumo10g01406 216 PRINTS Recoverin family signature 125 143 - -
Pumo10g01406 216 PRINTS Recoverin family signature 78 99 - -
Pumo10g01406 216 PRINTS Recoverin family signature 171 191 - -
Pumo10g01406 216 SMART efh_1 74 102 IPR002048 GO:0005509
Pumo10g01406 216 SMART efh_1 155 183 IPR002048 GO:0005509
Pumo10g01406 216 SMART efh_1 111 139 IPR002048 GO:0005509
Pumo10g01406 216 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Pumo10g01406 216 Pfam EF-hand domain pair 51 97 IPR002048 GO:0005509
Pumo10g01406 216 SUPERFAMILY EF-hand 23 204 IPR011992 -
Pumo10g01406 216 CDD EFh 111 181 IPR002048 GO:0005509
Pumo10g01406 216 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Pumo10g01406 216 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Pumo10g01406 216 Gene3D - 20 214 - -
Pumo10g01406 216 Pfam EF-hand domain pair 110 179 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01406 Pumo-Chr10 18786772 18792992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01406 28 216 EF-hand Containing Proteins AT5G24270 75.132 3.21e-100 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01406 K06268 - gmx:100811649 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01406 10 18786772 18792992 Pumo10g01406 10 18786772 18792992 ECH