Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01374 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGACACCATTGGGATTGAATACAAAGTTTTCCACTCATCGTCATAAGAGACCTTTAACTGTGGCATTTAAAGGGGATAAACACAATGACTCAGCTTTGGTTGCAACTCAAGAGAAAATTCCTGTGCCCGTTGAAACTGCAAAGACGAAGAAAAAAAAGATGGGAAAAACTAACAAATTACCTAAGAGAGAAAGTTCTCAATCTTCGTTGGATGTGGACTACAATGAAGCTGCTGCTATGCTTGAAAATATATACAAACTCAGCCCTGCATCTGATAATGCAGAATGTATAGATGGTAAAATCAAAAGAGTCTCTCGGAGAGGGAAGAGGGTTGTTGATGAAAGTGAAGAAAAGGAGTTAAACAGTAGTGATAGGGTGGTCAGAAATCAGAACAAGAAAGCTAAACGATTGAATCTTGATCAGAGAATTTCGTTAAAGAATAACCAAAGTGGAGACGCGGTCATTCCAACTCGAAAGAAAAGAAATGTTAAGAATAGAATTGAGAAGATTGAAGAGCTTATTAGGGAATATTCAGTATCAGCTGATTTTGTCAGTATGGATTGGAAAAAAATGAGAATACCTCCGGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCTCTGCTTCGAGTGAAAGAAGAGTTACAGAAGGAGCTAGCAAGAGAACCTGCAGATGGTGAACTAGCTGATGCAACAAACATGAGCATCGCTCAGGTAAAGAAAGCAATGGAGGTTGGTCAAGCTGCAAGAAACAAACTCATAAAACACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATATTTTACAGATTTTGCTAGTGGCCCTAGGTTTCAAGATCTTTGTCAGGCCGGAGTTAAGGGACTTATAACAGCAATTGATCGTTTTGAGCCAAACAGGAGGTTTAGGCTATCAACATATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCGATGACTCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAAACGGTTCGAGCAGAAATCCAAAAAGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCACCAACAGAAGAAGAAATAATAAAAAGAGTTAATATATCCCCTGAAAGATACCGTGACGTAATTAAGGCATCAAGATCCATTCTTTCGCTGAACTCGAGACATATAACAACACAAGAGGAGTTCATTAATGGGATCGTTGATGATGATGGTGTTAATGGTGATAATAGGAAGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGACGGCAAGGGTGACAGAACTTTGGGAGAAATTGCTGGGAACTTGAATATATCTAGGGAAATGGTTAGAAAGCATGAAGTCAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1518 0.3999 MGVVTVSSSAARTPLGLNTKFSTHRHKRPLTVAFKGDKHNDSALVATQEKIPVPVETAKTKKKKMGKTNKLPKRESSQSSLDVDYNEAAAMLENIYKLSPASDNAECIDGKIKRVSRRGKRVVDESEEKELNSSDRVVRNQNKKAKRLNLDQRISLKNNQSGDAVIPTRKKRNVKNRIEKIEELIREYSVSADFVSMDWKKMRIPPVLSSSEHAWLFKLMQPMKALLRVKEELQKELAREPADGELADATNMSIAQVKKAMEVGQAARNKLIKHNLRLVLFVINRYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFTRVPFGLETVRAEIQKAKTELTFELQRSPTEEEIIKRVNISPERYRDVIKASRSILSLNSRHITTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01374 505 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 410 498 IPR013324 -
Pumo10g01374 505 PRINTS Major sigma-70 factor signature 465 480 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 PRINTS Major sigma-70 factor signature 480 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 PRINTS Major sigma-70 factor signature 298 311 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 PRINTS Major sigma-70 factor signature 322 330 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 PRINTS Major sigma-70 factor signature 444 456 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 MobiDBLite consensus disorder prediction 58 80 - -
Pumo10g01374 505 NCBIfam sigma-70 family RNA polymerase sigma factor 267 493 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 Gene3D - 218 260 IPR036388 -
Pumo10g01374 505 Gene3D - 344 397 IPR036388 -
Pumo10g01374 505 Coils Coil 350 370 - -
Pumo10g01374 505 Coils Coil 171 191 - -
Pumo10g01374 505 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 75 504 - -
Pumo10g01374 505 Pfam Sigma-70, region 4 440 493 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 189 338 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 Gene3D - 428 505 IPR036388 -
Pumo10g01374 505 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 346 416 IPR013324 -
Pumo10g01374 505 Gene3D - 261 339 - -
Pumo10g01374 505 Pfam Sigma-70 region 2 271 337 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 Pfam Sigma-70 region 3 226 266 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pumo10g01374 505 Pfam Sigma-70 region 3 356 423 IPR007624 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01374 Pumo-Chr10 18241616 18246404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01374 K03093 - gmx:100812580 875.93