Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01352 ATGTCTACTTTTGAGTCAGAGAGGGACCCTGTGAGATTTGTGCACACAGTTTCAGAGGCAGGTCGCCTTCTTCCATCAGCTAGCCGCTGGAACTCCATAGCACTTGACTTTAAACTTGCTCCTAATTCTTCCACTGCCTATGAATCTATCCCTTCACAATACCCAAAATCTGTTGACTACAATCTTGTTATCACTGACAGGAAACACTTTCATTGTTTTATTTTTGTTTTGGTAGCAATCATTTTTGCCATCATAGCAGCTGTTCTGCTGGCACACTTTTTACCTCAGAAGCACAAGCATCAAAGGTCTACAATCAATGTCAAACTGGCAATAAATCAGGCTCTAACATTTTATGATGCTCAAAAATCTGGACACTATCCAAGGAACAGTCCAGTGAAATTTCGAGGAGATTCGGGATTACAGGATGGGGATTCGGCTAAGACAGATCTTACTGGTGGATTTTATGATTCTGGCAACAACATTAAGTTTACCTTCACCACAGCTTATACTATGACCATGTTGAGTTGGACTGTTATGGAATATCAAAGTAAATATGCTGATATTGGTGAGCTTGATCATGTGAGGGACATCATCAGATGGGGTAGTGACTACCTGCTCAAGGTGTTCATTCCCCCAGATTCAACAGCTGGATCAAACCTTACACTGTATTCCCAGGCAAGTTTTAAATTTTTTACCATTAGTGATAACAATGAGCAAAATGACGTGAGTTGCTGGCAACGACCTGAAGATATGAAATATGAGAGACCAGTTTCAATTTGTCATGGCTCTGCTTCAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCATCATCGATGGTATTCAAAGAAGACAAAGATTACTCAAGAAGACTTGTCCAAGCAGCAGAAAGCCTCTTTGAGGCGATCACAAGTGAAGATCCTTCAGAACAAGGGACCTACACCATGGTTGATGAATGTGGGAAACAATCAAGAATGCTTTATAACTCAACTAGCTACAAAGATGAGTTGGCTTGGGGAGCAACATGGTTATTTCTTGCTGCTGAAAACGTTGATTACCTTGCAACTGCAACTGAATTTTTTTTATCAGCCAAGAGTGATGAATCAAGTGTTGACAAAGGGGTCGTTTATTGGAATAACAAGCTCAATGCTGTGGAGATTTTGCTTACCGGTATTCGATACTTCCGTGATCCTGGCTTCCCACATGAGGATGCTTTGAAACTCTCATCAAACTCTACTGATGCCCTCATGTGTTCTTATCTATTCATTAAATACTTTAGCAGGACACCTGGTGGATTGATTATCGTGAAACCAGATAATGGGCCATTACTCCAGTATGCTGCTACAGCATCTTTTCTCAGTAAATTGTACAGTGATTACCTTGATCATCTCAAAATGTCTGGTGCAAGTTGCAAGACTGATGCATTCTCGGTTAGCTACATCTTGGGGCAAAACCCTATGAAAATGAGTTATTTAGTGGGCTATGGTGACAGGTTTCCTGTCCAGGTTCATCACAGAAGTGCATCAATCCCTTGGAATAACCAACCCTACACTTGTGACGATGGTAAGAAATGGCTGAACTCTAAAGATCCAAATCCACAGGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACTAATGATAATTTCATGGATCAAAGGACCAACCAAAAGTTCACTGAACCAAACATAGCAAGCAATGCTGGCTTAGTTGCAGCACTGATTGCACTTCAAGATCCTCCTTATAATTCACGTGACTTCAAAAACTCATTGTGGGGATGGACTTGA 1788 0.4133 MSTFESERDPVRFVHTVSEAGRLLPSASRWNSIALDFKLAPNSSTAYESIPSQYPKSVDYNLVITDRKHFHCFIFVLVAIIFAIIAAVLLAHFLPQKHKHQRSTINVKLAINQALTFYDAQKSGHYPRNSPVKFRGDSGLQDGDSAKTDLTGGFYDSGNNIKFTFTTAYTMTMLSWTVMEYQSKYADIGELDHVRDIIRWGSDYLLKVFIPPDSTAGSNLTLYSQASFKFFTISDNNEQNDVSCWQRPEDMKYERPVSICHGSASDLAGEIVAALSASSMVFKEDKDYSRRLVQAAESLFEAITSEDPSEQGTYTMVDECGKQSRMLYNSTSYKDELAWGATWLFLAAENVDYLATATEFFLSAKSDESSVDKGVVYWNNKLNAVEILLTGIRYFRDPGFPHEDALKLSSNSTDALMCSYLFIKYFSRTPGGLIIVKPDNGPLLQYAATASFLSKLYSDYLDHLKMSGASCKTDAFSVSYILGQNPMKMSYLVGYGDRFPVQVHHRSASIPWNNQPYTCDDGKKWLNSKDPNPQVLLGAMVGGPDTNDNFMDQRTNQKFTEPNIASNAGLVAALIALQDPPYNSRDFKNSLWGWT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01352 595 Gene3D - 104 580 IPR012341 GO:0005975
Pumo10g01352 595 Pfam Glycosyl hydrolase family 9 110 574 IPR001701 GO:0004553|GO:0005975
Pumo10g01352 595 SUPERFAMILY Six-hairpin glycosidases 107 579 IPR008928 GO:0005975
Pumo10g01352 595 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 480 506 IPR018221 -
Pumo10g01352 595 PANTHER ENDO-1,4-BETA-GLUCANASE 80 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01352 Pumo-Chr10 17986438 17989021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01352 56 577 Glycoside Hydrolase AT5G49720 43.704 1.67e-133 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01352 K01179 - gmx:100805472 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01352 10 17986438 17989021 Pumo10g01352 10 17986438 17989021 ECH