Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01338 ATGCAACACACCAAATTGCGTGGAACCATACAGAACTTTAACCTTAGCACATGGAGAAAACACCCATCATATTGGTCTAATTCCATAAGGAACCACATTCAGCAAGGATCATTCAGATGTGCTCTTCTTGCGTATAAACAAACCCGCTATGAAGGAGTATACGACTCCAGTTTGGTCCCTATGTTACTCAAGGCATGTGCTTCTCTTTCCTTCCTTCATTACGTGAAGGCCTTGCATGCAGAGTCCATCAAGGTTGGTTCAGAGAGCGACGTGATCATTGGAACTGCATTGCTTACAACTTATGCTAAATGTGGCGTCGTTAGGGATGCACGTAATCTGTTTGATACAATGCCTGTGAGAAATGTTGTGACTTGGAATGCCATGATCAGTCGGTACTTGAGAAATGGAGACACGGAATCTGCTTCTCTTGTGTTTGAGAAGATGCAGGGGAAAACACAAGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGTGATATTGCCACTGCTAGGAGGTTGTTTGATGAGGTTCCCCATGAGTTGAAGGATGTGCTAACATGGACTGTGATGGTTGATGGGTATGCTAGAATAGGGGAGATGGAAGCTGCCAGGGAGGTCTTTGAGATGATGCCTGAAAGGAATTGCTTTGTGTGGTCATCTATGCTTTATGGGTACTGCAAGAAGGGCAATGTCACTGAGGCTGAGGCTGTTTTCAACCGGGTTCCGGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGCTATGTCCAGAATGGACTTGGTGAGAAAGCACTGCAAGCTTTTGAGGGAATGGGAGCTGAAGGGTTTGAGCCGGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTGGGGCGCCTGGATGTTGGTAAGCAAATCCATCACATCATAGAACATAAAGGGATAGCTGTGAACCCGTTTGTGTTGAGTGGATTGCTTGACATGTATGCCAAATGTGGTGGCTTGGTCAATGCAAGGTTGGTATTTGAAGGGTTCAATGAGAGGAACATCTTCTGCTGGAATGCTATGATTTCAGGTTTTGCCATCCATGGAAAATGCAGGGAGGTTCTTGAGTTTTTTGGCAGGATGGAGGACTCAAATATGAGGCCTGATGGTATCACCTTTCTTACTGTGCTTTCGGCTTGTGCTCATGGGGGTTTGGTTAGTGAAGCTTTGGAAGTAATATCTAAAATGGAGGGATATGGAATTGAAATAGGAATGAAGCATTATGGATGCATGGTTGACCTCTTGGGCAGAGCAGGGAGATTAAAAGATGCTTATGACTTGATAGTAGGAATGCCAATGAAAGCTAACGACACAATTTTGGGGGCAATGCTTGGAGCATGCAGGATTCATTCAGATATGAACATGGCAGAACAAGTAATGAAGTTGATCAGTGAAGACTCTGTTACAGGTGCTGATTCTCACAACGTGCTTTTGTCCAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGGATGAGGAGGATCTTGGTAGATGGAGGGTCTCAAAAGACACCCGGGTGTAGTTCGATAATCTTTAGTGACTCTTGTGGATTGAAGTGA 1608 0.4447 MQHTKLRGTIQNFNLSTWRKHPSYWSNSIRNHIQQGSFRCALLAYKQTRYEGVYDSSLVPMLLKACASLSFLHYVKALHAESIKVGSESDVIIGTALLTTYAKCGVVRDARNLFDTMPVRNVVTWNAMISRYLRNGDTESASLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKDVLTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMLYGYCKKGNVTEAEAVFNRVPVRNLEIWNSMIAGYVQNGLGEKALQAFEGMGAEGFEPDEFTVVSVLSACAQLGRLDVGKQIHHIIEHKGIAVNPFVLSGLLDMYAKCGGLVNARLVFEGFNERNIFCWNAMISGFAIHGKCREVLEFFGRMEDSNMRPDGITFLTVLSACAHGGLVSEALEVISKMEGYGIEIGMKHYGCMVDLLGRAGRLKDAYDLIVGMPMKANDTILGAMLGACRIHSDMNMAEQVMKLISEDSVTGADSHNVLLSNIYAASEKWEKAERMRRILVDGGSQKTPGCSSIIFSDSCGLK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01338 535 SUPERFAMILY TPR-like 20 242 IPR011990 GO:0005515
Pumo10g01338 535 Pfam PPR repeat 154 178 IPR002885 -
Pumo10g01338 535 Pfam PPR repeat 422 445 IPR002885 -
Pumo10g01338 535 Pfam PPR repeat 188 217 IPR002885 -
Pumo10g01338 535 Pfam PPR repeat 219 243 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 154 178 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 385 416 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 219 243 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 350 383 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 123 149 IPR002885 -
Pumo10g01338 535 NCBIfam pentatricopeptide repeat 188 217 IPR002885 -
Pumo10g01338 535 Gene3D Tetratricopeptide repeat domain 24 151 IPR011990 GO:0005515
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 182 IPR002885 -
Pumo10g01338 535 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 132 527 IPR046960 GO:0003723|GO:0009451
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Pumo10g01338 535 FunFam Pentatricopeptide repeat-containing protein 321 529 - -
Pumo10g01338 535 Gene3D Tetratricopeptide repeat domain 217 321 IPR011990 GO:0005515
Pumo10g01338 535 Gene3D Tetratricopeptide repeat domain 322 533 IPR011990 GO:0005515
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 151 IPR002885 -
Pumo10g01338 535 FunFam Pentatricopeptide repeat-containing protein 151 214 - -
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Pumo10g01338 535 Gene3D Tetratricopeptide repeat domain 152 216 IPR011990 GO:0005515
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Pumo10g01338 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Pumo10g01338 535 FunFam Pentatricopeptide repeat-containing protein 215 312 - -
Pumo10g01338 535 Pfam PPR repeat family 248 294 IPR002885 -
Pumo10g01338 535 Pfam PPR repeat family 120 150 IPR002885 -
Pumo10g01338 535 Pfam PPR repeat family 348 395 IPR002885 -
Pumo10g01338 535 Pfam E motif 464 526 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01338 Pumo-Chr10 17760102 17762034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01338 25 530 Glycoside Hydrolase AT3G49170 30.039 1.96e-66 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01338 - - gmx:100802813 952.199