Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01325 ATGGTTGGTAAGGGTAATCTGAGGGCTGAGGACTTGAACTTGTGTTTTGAGAAGCTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATCACAGAGTGGAAGGACATTCCTGTGGAGCTTTTGATGCAAATTCTGTCCCTTGTGGATGATCAGACGGTGATCACAGCTTCTGGAGTTTGTCGTGGCTGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGTTCCTAAATTCGCGAAACTGCAAACTCTAATCCTCCGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAAATACTGTCATGAACTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTAACTGATCGTTCACTCTATGAACTTGCCCTTGGTTGTCGTGATCTTACAAAACTCAACATCAGTGGGTGTTCAGCGTTCCGTGACAATGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGATGTGTTAGAGCTGCATCTGATACTGCATTACTGGCTATTGGACAATACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGCGATGTTGGAGTGACTACTTTAGCATACGGCTGTCCTGATCTTAGGATAGTTGACTTGTGTGGTTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCAACTAGATGCCCCCATCTGAGGTCCCTAGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCCTTGGCACACAGCAAGGTGAATAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGATGAAGATGGCTTAAAGACTTTGAACATTAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCTGTTTGTGACTCATTCCCTTCACTTCACACATGCTCAGGGAGGCATTCACTCATCATGAGTGGCTGCCTCAACTTGACGTCAGTGCATTGTGCCTGTGCTGTTCATGCACACCGTGCATTCAGCACTTTCCCTCATCCTGCTCATTAA 1116 0.4525 MVGKGNLRAEDLNLCFEKLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLEDNAVETIAKYCHELQILDLSKSFKLTDRSLYELALGCRDLTKLNISGCSAFRDNALAYLASFCRKLKVLNLCGCVRAASDTALLAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALATRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRMWGSVKGGNDEDGLKTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFSTFPHPAH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01325 371 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Pumo10g01325 371 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Pumo10g01325 371 FunFam F-box protein SKP2B 77 295 - -
Pumo10g01325 371 PANTHER UNCHARACTERIZED 69 335 - -
Pumo10g01325 371 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Pumo10g01325 371 Gene3D Ribonuclease Inhibitor 81 358 IPR032675 -
Pumo10g01325 371 Gene3D - 39 80 - -
Pumo10g01325 371 CDD F-box_AtSKP2-like 41 88 - -
Pumo10g01325 371 FunFam F-box protein SKP2A isoform A 39 80 - -
Pumo10g01325 371 Pfam F-box-like 43 76 IPR001810 GO:0005515
Pumo10g01325 371 SMART LRR_CC_2 103 129 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 182 208 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 156 181 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 302 327 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 235 260 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 130 155 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 261 286 IPR006553 -
Pumo10g01325 371 SMART LRR_CC_2 209 234 IPR006553 -
Pumo10g01325 371 SUPERFAMILY RNI-like 79 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01325 Pumo-Chr10 17601598 17604924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01325 K03875 - gmx:100818928 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01325 10 17601598 17604924 Pumo10g01325 10 17601598 17604924 ECH
Pumo9g01102 9 31330624 31335070 Pumo10g01325 10 17601598 17604924 PCT