Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01320 ATGATTTCAAGCTATGCTAGACATGATTTAGGGGAAGATGCTTTGCAACTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACAGAATACATGGTTAGCTCTCTCCTGAGTTCTGTTTCGATTTTCTTACCAGTTGAAGTGGGCAATCAAGTCCATTCTTTGGTTCCTAAATTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTCGATATGTATGCTAAATTTGGGTTTATTGATGATGCCTTGAATATCTTCAATGAAATGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGACTTACAATGGTAGAGTGTCTTTGACCATGGACCTCTTCAGGGAATTATTGACTAAAGAAGGCATGCTACCAGATCGAATAACACTTACTGCAGTTCTACTAGCATGCAACTATGGGTTATTGGTTGATGAAGGAATTGAAATATTTTCCTCAATGGAGATGGAATTCGGAGTAAAACCAGGAGAAGAACATTATGCATGTGTTGTGGAGATGTTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGATATCGTAGAAACAATGCCGTATAGAACTACCTCTGACATTTGGAGGTCAATTCTTTCTGCATGTGCAATTTATGGAAACTTGCAAATTATAGAAGGAGTTGCAAAGAAAATAATGGATAGGGAATCACAAACATCATTACCTTACTTGGTGTTGGCTCAAGCATATCAAATGAGGGGTAGATGGGATGCCATGGTTCGAATGAGGAAGGCTGTGGAAAATAGAGGTACTAAAGAGATCATTGGACACAGTTGGATTGGAATAAAAAATAATGTGTACGCTTTTGCGTCAAATCAATTACAGCATTATGGTGGCAAGGATCTTTATCTGGTGTTGAATTTACTGGTCTGGGAGATGGAGACTGAAGGTTATGTCTAA 942 0.3843 MISSYARHDLGEDALQLFVLTLRKNIRPTEYMVSSLLSSVSIFLPVEVGNQVHSLVPKLGFESDAVVANSLVDMYAKFGFIDDALNIFNEMKIKDLVSWNTIMMGLTYNGRVSLTMDLFRELLTKEGMLPDRITLTAVLLACNYGLLVDEGIEIFSSMEMEFGVKPGEEHYACVVEMLSKAGKLKEAIDIVETMPYRTTSDIWRSILSACAIYGNLQIIEGVAKKIMDRESQTSLPYLVLAQAYQMRGRWDAMVRMRKAVENRGTKEIIGHSWIGIKNNVYAFASNQLQHYGGKDLYLVLNLLVWEMETEGYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01320 313 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 313 IPR046960 GO:0003723|GO:0009451
Pumo10g01320 313 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 66 292 - -
Pumo10g01320 313 NCBIfam pentatricopeptide repeat 97 131 IPR002885 -
Pumo10g01320 313 NCBIfam pentatricopeptide repeat 68 95 IPR002885 -
Pumo10g01320 313 Gene3D Tetratricopeptide repeat domain 1 144 IPR011990 GO:0005515
Pumo10g01320 313 Pfam PPR repeat 171 194 IPR002885 -
Pumo10g01320 313 Pfam PPR repeat 1 23 IPR002885 -
Pumo10g01320 313 Pfam PPR repeat 67 94 IPR002885 -
Pumo10g01320 313 Pfam PPR repeat 97 124 IPR002885 -
Pumo10g01320 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Pumo10g01320 313 Gene3D Tetratricopeptide repeat domain 145 292 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01320 Pumo-Chr10 17501750 17503576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01320 12 313 Glycoside Hydrolase AT3G49170 31.457 1.97e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01320 - - gmx:102663822 591.652