Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01319 ATGGAATTGCATGGCCTGGCACGCACGCTTCAATCCTGGTCCTCGCTTCGTGAAGGGAGGCAACTCCATGTGGCATTCCTTAAAACCGGCATTCTAAACTCCTCCGTCACCGTAGCAAACCGGCTTCTCCAGCTATACTCTCGCAGCGGCCATCTCCGCGATGCATCCCACTTGTTCGACGAAATGCCCCACGCAAACTCTTTCTCTTGGAACACCCTGGTCCAAGCCCACCTCAACTCAGGCCACACCCACAATGCCCTCCACTTGTTCAATGCCATGCCTCACAAGACCCACTTCTCATGGAACATGGTCGTTTCCGCATTTGCCAAGTCTGGACACCTCCAACTAGCCCACTCTCTCTTCAATGCCATGCCCTCAAAGAACAACCTCGTATGGAATTCCATAATTCATAGTTATTCCCGACATGGGCATCCTGGGAAAGCTCTGTTCCTCTTCAAGAGCATGAACTCGGACCCTTCACAAATAGTGCACTGTGATGCCTTTGTGCTGGCCACTGTTCTTGGTGCTTGTGCTGACTTGCTGGCTCTCAACTGTGGGAAACAAGTCCATGCACGTGTTTTCGTTGATGGTATGGGGTTGGAGCTTGACAGGGTCTTGTGCAGCTCGCTGATTAACTTGTATGGGAAGTGCGGTGATTTGGATAGTGCTGCTTGTGTTATGAGTTTTGTGAGGGATGTGGATGACTTCTCTTTGTCAGCTTTGATATCTGGTTATGCCAATGCCGGCAGAATGAGGGAGGCGAGAAGGGTTTTTGATAGGAAGGTTGATCCATGTGCTGTGCTGTGGAATTCGATTATTTCAGGTTATGTGTCCAATGGTGACGAGATGGAAGCGGTAAATCTTTTCAGTGCAATGCTTAGGAATGGTGTTGGGGGAGACGCATCTACTGTTGCTAATATTTTGAGTGCAGGCAGTGGTTTGCTTGTTGTTGAACTTGTTAAGCAAATGCATGCGTATGCTTGTAAAGCTGGGGTGACTCATGATATAGTGGTTGCTAGTGCTCTGCTTGATGCCTACTCCAAATGTCAAAGCCCTTGTGAAGCTTGCAAGTTGTTTAGTGAGCTCAAAGCTTATGATACCATTTTGCTTAATACTATGATCACTGTGTATTCTAATTGCGGAAGGATTGAAGATGCAAAATGGATTTTTAACTCGATGCCTAGTAAAACCTTAATTTCATGGAATTCAATTCTAGTTGGCCTAACACAGAATGCGTGTCCAAGTGAAGCGTTGGATGTTTTTTGTCAGATGAATAAGCTGGACGTAAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGCCAGCAAATCATCCCTTGAACTTGGTGAGCAGGTATTTGGTAAAGCTATTACCATTGGGCTTGAATCTGACCAGATAATTTCTACTTCCCTTGTTGATTTTTATTGTAAATGTGGTTTTGTTGAGATAGGGCATAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTCTCGTGGAACACAATGTTGATGGGGTATGCCACAAATGGATATGGAATTGAAGCACTGACACTCTTTAGTGAAATGAGGTATGGTGGTGTCAGGCCTTCTGCCATTACTTTTACTGGAGTTCTTTCAGCCTGTGATCATAGTGGTTTGGTTGAAGAGGGAAGAAATTTGTTCCGCTCAATGAAACATACCTATAATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCCGAGCTGGATGCTTCGAGGAAGCAATGGATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTGTCAGTATTGAGAGGCTGCATAGCTCATGGAAATAAGACTATTGGCAAGATGGCTGCAGAGAAAATCATTCAGCTTGATCCTGAAAATGCAGGTGCTTATATACAATTATCTAACATACTTGCATCTTCTGGGGACTGGGAAGGGTCAGCATTACTAAGAGAACTGATGAGAGATAAGCATGTTCAGAAGATTCCTGGTTGCAGTTGGGCCGATTGTTGA 2037 0.4462 MELHGLARTLQSWSSLREGRQLHVAFLKTGILNSSVTVANRLLQLYSRSGHLRDASHLFDEMPHANSFSWNTLVQAHLNSGHTHNALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNNLVWNSIIHSYSRHGHPGKALFLFKSMNSDPSQIVHCDAFVLATVLGACADLLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAACVMSFVRDVDDFSLSALISGYANAGRMREARRVFDRKVDPCAVLWNSIISGYVSNGDEMEAVNLFSAMLRNGVGGDASTVANILSAGSGLLVVELVKQMHAYACKAGVTHDIVVASALLDAYSKCQSPCEACKLFSELKAYDTILLNTMITVYSNCGRIEDAKWIFNSMPSKTLISWNSILVGLTQNACPSEALDVFCQMNKLDVKMDKFSFASVISACASKSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGHKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFSEMRYGGVRPSAITFTGVLSACDHSGLVEEGRNLFRSMKHTYNINPGIEHYSCMVDLFARAGCFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGKMAAEKIIQLDPENAGAYIQLSNILASSGDWEGSALLRELMRDKHVQKIPGCSWADC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 227 311 IPR011990 GO:0005515
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 543 670 IPR011990 GO:0005515
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 312 396 IPR011990 GO:0005515
Pumo10g01319 678 SUPERFAMILY TPR-like 357 654 IPR011990 GO:0005515
Pumo10g01319 678 Pfam PPR repeat family 498 544 IPR002885 -
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 96 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 267 298 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 573 596 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 237 260 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 500 533 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 131 155 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 99 130 IPR002885 -
Pumo10g01319 678 NCBIfam pentatricopeptide repeat 399 432 IPR002885 -
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 2 96 IPR011990 GO:0005515
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 402 542 IPR011990 GO:0005515
Pumo10g01319 678 Gene3D Tetratricopeptide repeat domain 97 198 IPR011990 GO:0005515
Pumo10g01319 678 Pfam PPR repeat 472 496 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 237 260 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 131 157 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 99 128 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 572 596 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 206 223 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 399 427 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 40 63 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 267 297 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 68 94 IPR002885 -
Pumo10g01319 678 Pfam PPR repeat 371 396 IPR002885 -
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Pumo10g01319 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 93 IPR046960 GO:0003723|GO:0009451
Pumo10g01319 678 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 452 548 - -
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Pumo10g01319 678 Pfam E motif 615 675 IPR046848 -
Pumo10g01319 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Pumo10g01319 678 FunFam Pentatricopeptide repeat-containing protein chloroplastic 550 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01319 Pumo-Chr10 17495378 17498429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01319 16 677 Glycoside Hydrolase AT3G49170 29.661 3.31e-102 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01319 - - gmx:100790756 1262.67