Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01318 ATGGGTGTAAGTGCTGCTTCTATACTGAACCAGCTCCTCCGCAAGCAAAACCTGAAACCTCAATCCCAACCCGCCACCAACGCAGTGATCAAAACAATCCTCACATACCTCAAAGCGGGTCGAATCCGAAAAGCCACTTCTATTCTCTTCGCCTTCCCAAAACCCTTCCCTTTCTCTCTCTACGCCCTCTTCTTCCGCCTCTGCTCTTCCCATCGCGCCATCGTCGAGGCCCGCAAGGTCGAGTCCCACTTGCTCACCTTCTCCCCCAACCCCCCCACCTTCCTCCTCAACCGCGCCATCGAGTCCTACGCCAAATGCCACTGTCTCCGCGACGCCCGAGAACTGTTCGACGAAATGTCCCAACGAGATGGCGGCTCTTGGAACGCCCTCATTACCGCTTACTCCCAATTGGGTTTCCCCAACCAGGCCTTTTCCTTGTTCCTCTGCATGACTAGGTCCGGTTTTTGCCCTACCGAGGTTACTTTTGCTAGCGTTCTCGCCTCTTGCGCTGCTGCTTCTGAGCTTCTTCTTTCCAAGCAGGTTCATGGCTTGGTGACAAAGTTTGGCTTTTGTGGCAACGTGATCCTCGGGAGTTCCCTTGTTGATGTTTATGGAAAGTGCGGGGTTATTGTTGATGCTCGCAAGATGTTTCATGAGATTCCGCAGCCTAATGCTGTTACCTGGAATGTGATTGTGAGGCGGTATCTCGATGCTGGTGATGCGAAGGAGGCGGTTTTCATGTTCTCGTGGATGTTTTCCACCGCGCCTGTTAGGCCGATGAATTTTACTTTCTCTAATGCTCTTGTTGCCTGTTCCAGCGTGTCTGCGCTCCGGGAGGGGATGCAGATTCATGGGGTGGTTGTGAAGTTGGGTCTCCATGAGGATAATGTTGTTTCGAGCTCGCTTGTGAACATGTATGTCAAGTGTGGTAGGCTGGAGGATGGTTTTCAGGTTTTTGATCAGCTTGGGTTTAGAGATTTGGTGTGTTGGACTTCTATTGTCTCGGGGTATGCGATGAGTGGGAAAACTTTGGAGGCAAGAAAGCTTTTTGATGAGATGCCTGAACGGAATGTGATCTCGTGGAATGCAATGTTGGCGGGATATGTTCGGTGCTTGGAATGGTCTGAGGCATTAGATTTTGTGTATCTCATGCTTGATACGATTAAAGATGTGGATCATGTCACTCTTGGTTTGATGTTAAATGTTTCGGCAGGTATTTCAGATCATGACATGGGGAAACAGGTTCATGGATATATCTATAGACAAGGCTTCCACTCAGACCTTAGGCTCAGCAATGCCCTTCTTGACATGTATGGTAAATGTGGGAACTTAAACAGTGCCAGGGTTTGGTTTAACCAGATAAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTGTTGGCTAGCTATGGTCATCATCAATTAAGTGAACAGGCATTAACAATGTTTTCAGAGATGCAGTGGGAGACAAAACCAACCAAGTATACATTTGGAACCCTTTTGTTAGCATGTGCAAATACCTTTTCTCTTTGTCTTGGCAAACAAATTCATGGATTCATCATTAGACATGGATTTCAGATAGATACTATAACCAGAACTGCTTTGGTTTACATGTACAGTAAATGTCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAGGGGGCAGTTTCCAGGGATGTGATCATTTGGAATACCATAATTATGGGATGTTGTCACAATCATAAAGGTAAAGAAGCGCTTGAACTTTTTGTGATAATGGAAGCTGAAGGCATCAAGCCAGACCATGTGACCTTTAAGGGTATTCTGCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACCGAATGCTTTAAGTCAATGAGCAGTGAATACCATGTCCTGCCTCGGCTGGAGCATTATGACTGCATGATCGAACTCTACAGTCGGCATGGATACATGGATGAGCTTGAGAATTTTATGAGGACAATGACAATGGAGCCCACACTACCCATGTTGAAAAGAGTTCTTGATGTTTGTCAGAAAAATGAGTGCTCAAGATTGGGAGAATGGATTACAGAAAAAATTAATGAATTCAAACATTAA 2085 0.4614 MGVSAASILNQLLRKQNLKPQSQPATNAVIKTILTYLKAGRIRKATSILFAFPKPFPFSLYALFFRLCSSHRAIVEARKVESHLLTFSPNPPTFLLNRAIESYAKCHCLRDARELFDEMSQRDGGSWNALITAYSQLGFPNQAFSLFLCMTRSGFCPTEVTFASVLASCAAASELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVIVDARKMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSWMFSTAPVRPMNFTFSNALVACSSVSALREGMQIHGVVVKLGLHEDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEARKLFDEMPERNVISWNAMLAGYVRCLEWSEALDFVYLMLDTIKDVDHVTLGLMLNVSAGISDHDMGKQVHGYIYRQGFHSDLRLSNALLDMYGKCGNLNSARVWFNQISNWRDRVSWNALLASYGHHQLSEQALTMFSEMQWETKPTKYTFGTLLLACANTFSLCLGKQIHGFIIRHGFQIDTITRTALVYMYSKCRCLEYAIEVLKGAVSRDVIIWNTIIMGCCHNHKGKEALELFVIMEAEGIKPDHVTFKGILLACVEEGLVEFGTECFKSMSSEYHVLPRLEHYDCMIELYSRHGYMDELENFMRTMTMEPTLPMLKRVLDVCQKNECSRLGEWITEKINEFKH 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01318 694 FunFam pentatricopeptide repeat-containing protein At2g33680 532 694 - -
Pumo10g01318 694 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 342 692 IPR046960 GO:0003723|GO:0009451
Pumo10g01318 694 Pfam PPR repeat 328 358 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 100 122 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 432 454 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 359 385 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 300 321 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 126 155 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 633 657 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 198 220 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat 226 248 IPR002885 -
Pumo10g01318 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Pumo10g01318 694 FunFam Pentatricopeptide repeat-containing protein At3g26540 280 409 - -
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 177 273 IPR011990 GO:0005515
Pumo10g01318 694 FunFam Pentatricopeptide repeat-containing protein 50 169 - -
Pumo10g01318 694 FunFam Pentatricopeptide repeat-containing protein 410 511 - -
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 512 610 IPR011990 GO:0005515
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 301 411 IPR011990 GO:0005515
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 611 692 IPR011990 GO:0005515
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 5 176 IPR011990 GO:0005515
Pumo10g01318 694 Gene3D Tetratricopeptide repeat domain 412 511 IPR011990 GO:0005515
Pumo10g01318 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat family 558 605 IPR002885 -
Pumo10g01318 694 Pfam PPR repeat family 459 505 IPR002885 -
Pumo10g01318 694 NCBIfam pentatricopeptide repeat 126 159 IPR002885 -
Pumo10g01318 694 NCBIfam pentatricopeptide repeat 461 487 IPR002885 -
Pumo10g01318 694 NCBIfam pentatricopeptide repeat 328 358 IPR002885 -
Pumo10g01318 694 NCBIfam pentatricopeptide repeat 562 594 IPR002885 -
Pumo10g01318 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Pumo10g01318 694 FunFam Pentatricopeptide repeat-containing protein At3g26540 174 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01318 Pumo-Chr10 17491650 17494741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01318 18 692 Glycoside Hydrolase AT3G49170 28.220 3.91e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01318 - - gmx:100775626 1300.42